G40518


Basic Information

Item Value
gene id G40518
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7283721 ~ 7284935 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU45956
ATTACTGTAACGCTCTACTGGGTGGTTGTTCTGCTCGCCTGATAAATAAACTACAGCTCGTACAAAATGCAGCAGCTAGAGTTCTTACTAGAACCAGGAAGTATGACCATATTAGCCCAGTTCTGTCAACACTGCATTGGCTTCCTGTTAAACATCGTATAGATTTTAAAATCTTGCTAATTACTTACAAAGCACTAAATGGTTTAGCTCCCCAGTACCTGAGCGAGCTCCTAATTCATTATAGTCCTTCACGTCTATTGCGATCTCAGAATTCAGGCCAGCTGATAATACCTAGAATATCAAAATCAACCGCAGGTGGTAGATCCTTCTCCTATTTGGCACCTAAACTCTGGAACAATCTTCCTAGCATTGTTCAGGAAGCAGACACACTCTGTCAGTTTAAATCTAGACTAAAAACGCATCTCTTTAACCTGGCATACACATAACACATTTACCAATTTATATTTTCAAATCCGTTAAAGGATTATTAGGCTGCATAAATTAGGTCAGCCGGAACCGGGAACACTTCCTATAACACCTGATGTACTCGTTACATCAGAAGAAGAATGGCATCTACGCTAATATTAGTCTTTCTGTTTATCCCGAGGTTCACCATAGTCAACCGTATCCGGGCCGTATCCAGGTGAGACCAAGGACCTGCACCTTGACATGACCACAACGCAGCCCTGACGTATCAGCAGAGATTGAGTCAACTAGATCATCCACTGTGAGGGCCTCATCGACACGACAGCCAGTGGCACAGCTCCTCAACAAACCGTCCATACTGGCGTGATCCTCCAATACGATCCTCAATTGGATGGAACTGGAATAAATACTTTTAATGTTGCAATCCTATTGGACTTATGATAGCAACCTGAATTGTAACAAAGGAGAACTGGCCCCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTTCTCCATTTTAACACCAATTTGCCACTTGTCTGTCACCTGATGGAGTTTGGGTTCCTTGCCGCTGGCTTGCTTAGTTGGGGACACTTGACATTTGATATTCAACAGTGCTTTGATCTGCCTGCATTGACACTATTCTTTTAAGAGCTGCTGTGCAGCCGAATAATGTACCAGTTATCAATGTAAAGCTGCTTTGACACAATCTACATTGTAAAAAGCGCTATATAAATAAAGGTGACTTGACTTGACTTAAGATGTCTTGTCTTGCTGTAGAATTTTTA
>TU45954
ATTACTGTAACGCTCTACTGGGTGGTTGTTCTGCTCGCCTGATAAATAAACTACAGCTCGTACAAAATGCAGCAGCTAGAGTTCTTACTAGAACCAGGAAGTATGACCATATTAGCCCAGTTCTGTCAACACTGCATTGGCTTCCTGTTAAACATCGTATAGATTTTAAAATCTTGCTAATTACTTACAAAGCACTAAATGGTTTAGCTCCCCAGTACCTGAGCGAGCTCCTAATTCATTATAGTCCTTCACGTCTATTGCGATCTCAGAATTCAGGCCAGCTGATAATACCTAGAATATCAAAATCAACCGCAGGTGGTAGATCCTTCTCCTATTTGGCACCTAAACTCTGGAACAATCTTCCTAGCATTGTTCAGGAAGCAGACACACTCTGTCAGTTTAAATCTAGACTAAAAACGCATCTCTTTAACCTGGCATACACATAACACATTTACCAATTTATATTTTCAAATCCGTTAAAGGATTATTAGGCTGCATAAATTAGGTCAGCCGGAACCGGGAACACTTCCTATAACACCTGATGTACTCGTTACATCAGAAGAAGAATGGCATCTACGCTAATATTAGTCTTTCTGTTTATCCCGAGGTTCACCATAGTCAACCGTATCCGGGCCGTATCCAGGTGAGACCAAGGACCTGCACCTTGACATGACCACAACGCAGCCCTGACGTATCAGCAGAGATTGAGTCAACTAGATCATCCACTGTGAGGGCCTCATCGACACGACAGCCAGTGGCACAGCTCCTCAACAAACCGTCCATACTGGCGTGATCCTCCAATACGATCCTCAATTGGATGGAACTGGAATAAATACTTTTAATGTTGCAATCCTATTGGACTTATGATAGCAACCTGAATTGTAACAAAGGAGAACTGGCCCCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTTCTCCATTTTAACACCAATTTGCCA
>TU45953
ATTACTGTAACGCTCTACTGGGTGGTTGTTCTGCTCGCCTGATAAATAAACTACAGCTCGTACAAAATGCAGCAGCTAGAGTTCTTACTAGAACCAGGAAGTATGACCATATTAGCCCAGTTCTGTCAACACTGCATTGGCTTCCTGTTAAACATCGTATAGATTTTAAAATCTTGCTAATTACTTACAAAGCACTAAATGGTTTAGCTCCCCAGTACCTGAGCGAGCTCCTAATTCATTATAGTCCTTCACGTCTATTGCGATCTCAGAATTCAGGCCAGCTGATAATACCTAGAATATCAAAATCAACCGCAGGTGGTAGATCCTTCTCCTATTTGGCACCTAAACTCTGGAACAATCTTCCTAGCATTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45956 False 1215 lncRNA 0.42 1 7283721 7284935
TU45954 False 961 lncRNA 0.43 1 7283975 7284935
TU45953 True 373 lncRNA 0.41 1 7284563 7284935

Neighbor

gene id symbol gene type direction distance location
CI01000005_07190084_07218097 NA coding downstream 65588 7189596 ~ 7218133 (-)
CI01000005_07143500_07144465 NA coding downstream 139156 7143482 ~ 7144565 (-)
CI01000005_07111233_07112234 NA coding downstream 171455 7110722 ~ 7112266 (-)
CI01000005_07093538_07094533 NA coding downstream 189152 7093482 ~ 7094569 (-)
CI01000005_07052874_07068345 NA coding downstream 215344 7052730 ~ 7068377 (-)
CI01000005_07355833_07360372 NA coding upstream 70898 7355833 ~ 7360372 (-)
CI01000005_07373961_07374634 NA coding upstream 88475 7373410 ~ 7374634 (-)
CI01000005_07398684_07399164 MPC1.S, MPC1, MPC1.L coding upstream 113552 7398487 ~ 7399164 (-)
CI01000005_07436839_07437813 NA coding upstream 151130 7436065 ~ 7438424 (-)
CI01000005_07591912_07592984 NA coding upstream 306977 7591912 ~ 7592991 (-)
G40503 NA non-coding downstream 51869 7231606 ~ 7231852 (-)
G40499 NA non-coding downstream 60828 7222607 ~ 7222893 (-)
G40497 NA non-coding downstream 63362 7220011 ~ 7220359 (-)
G40472 NA non-coding downstream 128106 7155361 ~ 7155615 (-)
G40402 NA non-coding downstream 218421 7060587 ~ 7065300 (-)
G40520 NA non-coding upstream 379 7285314 ~ 7287242 (-)
G40519 NA non-coding upstream 7137 7292072 ~ 7317486 (-)
G40531 NA non-coding upstream 33654 7318589 ~ 7318965 (-)
G40547 NA non-coding upstream 40947 7325882 ~ 7326152 (-)
G40549 NA non-coding upstream 42100 7327035 ~ 7327239 (-)
G40487 NA other downstream 87293 7195795 ~ 7196428 (-)
CI01000005_06481721_06483251 NA other downstream 800232 6481355 ~ 6483265 (-)
G39515 NA other downstream 1449182 5833792 ~ 5834539 (-)
G38415 NA other downstream 2882611 4381238 ~ 4401110 (-)
G38510 NA other downstream 3077513 4204845 ~ 4206208 (-)
G40540 NA other upstream 241286 7526221 ~ 7532148 (-)

Expression


Co-expression Network