G40402


Basic Information

Item Value
gene id G40402
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7060587 ~ 7065300 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU45804
CACATGAGCCAATGTTTTATTCACAATAGAACATAGATAACACAAATGTTTAAATGGAGAAATTTTACATTTTTTTTATGCACAAAATGAGCTCATTTCAAATTTGCCTGCTCCAGTTTTGGGACGTCGGAGTGTTGCTTGCGCACTGTTGCTTTGAACGCCTTCAGTCTGTTATTGTCTGTACATCGCTTGCCTTGGAGATGCAAGACTGTGGCCTTTTGTTCCGCTGCCAGCTGGTGGTCGTTTGAGCCAGTACATTGTTGATTTGTGTTGTTTGTTTTTTGTGTGTGTCTTGTTAAAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGAGTGGGATTGAAGTTTATTTATTTTTTGTTGTTGTTGTTGTTGTTGTTGCTTGGTTTGTTTATTGTATTATTCTTATTTGTATTATTTGGTTTCATTGTTAGTTGATTTGGTTTAGGTGTTTGTTTGAATTTTGTTATTGGGGTTTGTTGGGTATTATTTCTTTGTCTTACTATACATTGATATTGCTCAGTTAAGAAACTGAGAATTTATGGTTTATTTTGGGTGATTCTTTTTTTTTGAGTTTCTTTTTTTTTCTCCTTTCTTATGGTGTATTATGTTGTGTTGGTTTAAAGTAGTTAACGTATAATTTTGTTGTTTTTTGGTCGGTTTGGATTGTTTAAATGTATTACTTTTTTTCACTCTTGGTTCATGATTTGAGCTGTATGAAATGTTTGGTGTAACGATATAACATCAAAGAAACTATCCACCTGTAGTAATTCTTTTTTTTTTTTTTTTTTTTTTGGGGGGGCTTTTTTTTTTTTTTTTTTTGTGATCTGTTGCTTCTTTTTTTGTATTGTTATTCATTATTGTCGTTATTGTTATTATTGTTACTGTTGTTATTATTATCTTTTTTTTTTTTTTTTTTGCGTATAGGGGTGGCCGGTTCATTTGGTCTGACTAAACCAAAGCCAATGGGCTGGTTGTAGCATTGAAGCACATTGTATAGTAATTGAAGACTCGTCTTTTGGGGGCCCCATAAGCAAGGTATTTTGGCCACCTCTGCTACCAGTGCCACTGAATGCTAGCTTGGTTTAAGCCAAGTGGTTGACTTTTAAGCGTAAAGTGTCTTTTCTTACGAATGTTGAGCTCAATGTTTTAATAGTGTCTTTTTGATAAATAAACTTGTGATCTTGTGATCATTATGTTTCTGCTTGTCCTTTTCATTTAGTTGAAAGCCTACTACTGGGAGGCTTAAAAATGTGGGGGTCTTTTATCAGGGGTATAATCTGATTAGGTCTCGATCACACATATCTCTTGACCAAAATAAACATTAGGATGGATTGGGTAAAATGTGTCAGGGTAATGTAAATTACCTGAAGGATGTGTTGTACTATCCAGCCCACTAGGGGGACTTAAGGAGTACTGTATGGACAAGTTACACACAGAAGTGAGTAAGAGTGTTCCTGATGTAAACTAACTGAATACAGAATACTGAATACTAACTGGTCTCTGGGGCTCTTCAATAAATCTCAAGAGATGATTAATGCCTCCTTGTAAATGTATACTAGACATGGTGTCGGAAGTGTAAAAACAAGAGAAGAGCAATATGTCGAAATTGAATCCGCCAGAAAGTTTGAACTTTGATCGTCCAGCAGAGTGGCCAGGTTTGTGCACTACAGGTCTGCAACAAAACTGAGCAAAGAAGATAAAGAGGTACAGATTAGCACTTTATTACATTCTATGGGCACTGAAACAGAACATTTTCGAATCGCTCACCTTCTCGGCAAAGGAAAGTGCTTGACGTTGCTTGGAAAATTTGATTAATATTTTTTGCCGAAAGAGAACATGATACATGAGCAGGCATGTTTCCACCAGAGAGTGCAGAAGCCCGAAGAAAAGGCTAAGTGCTACATCAGAGCCCTCTAGGAACTGTGAATTTAGTGCAAGTCGAAACGAACATATAAGAGACAGACTTGTAGTCGGAATTCAGGATAAAGAGCTTTATAAAGAATGCAGCTAATGACAGCACTTACCCTGGAAATGGCGATGCAGATGACGTGGCAGACTGATGATGTTGCGCAGCAGATCAGCCAGCAGGAGGGTCAGTCAATGAGCAGCGTGTAAGAGGTAGCCCCCTGGATGAAAGAGACACACAAAAGAGGCAGTGAGAAAGAAGAAAGGATACAGAGAATGTATGTGGCAGGGGAGAGTGTGATGTATTGATTACTGTTACAGTCACGCCTGTCCTGAACTCCGTTTCCCATGATCCTCCCTGTTCCTCACCTGAACTCACTTCCCTCATCTGCTTTCCCGCTCTTCCTGCATTCCCTGCACCTGTTCATCATCGTTAGCACTCCCTTTATGTTGGACTCACTCCTTGCACTCCTGGTCCGTTCTTGTTGTTAACCTTTGTTTAATGTGTATGAGCTGTTCTGATTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45804 True 2462 lncRNA 0.41 2 7060587 7065300

Neighbor

gene id symbol gene type direction distance location
CI01000005_07035672_07037203 NA coding downstream 23311 7034777 ~ 7037276 (-)
CI01000005_07018058_07025374 LGI1A, LGI3 coding downstream 35213 7016841 ~ 7025374 (-)
CI01000005_06815976_06894322 SLIT1A, SLIT1 coding downstream 166002 6815378 ~ 6894585 (-)
CI01000005_06772433_06793278 NVL coding downstream 267309 6772433 ~ 6793278 (-)
CI01000005_06765592_06772165 NA coding downstream 288422 6765273 ~ 6772165 (-)
CI01000005_07093538_07094533 NA coding upstream 28182 7093482 ~ 7094569 (-)
CI01000005_07111233_07112234 NA coding upstream 45422 7110722 ~ 7112266 (-)
CI01000005_07143500_07144465 NA coding upstream 78182 7143482 ~ 7144565 (-)
CI01000005_07190084_07218097 NA coding upstream 124296 7189596 ~ 7218133 (-)
CI01000005_07355833_07360372 NA coding upstream 290533 7355833 ~ 7360372 (-)
G40408 NA non-coding downstream 60715 6999253 ~ 6999872 (-)
G40407 NA non-coding downstream 62244 6997582 ~ 6998343 (-)
G40382 NA non-coding downstream 115015 6943111 ~ 6945572 (-)
G40379 NA non-coding downstream 121293 6939091 ~ 6939294 (-)
G40378 NA non-coding downstream 121933 6938427 ~ 6938654 (-)
G40472 NA non-coding upstream 90061 7155361 ~ 7155615 (-)
G40497 NA non-coding upstream 154711 7220011 ~ 7220359 (-)
G40499 NA non-coding upstream 157307 7222607 ~ 7222893 (-)
G40503 NA non-coding upstream 166306 7231606 ~ 7231852 (-)
G40518 NA non-coding upstream 218421 7283721 ~ 7284935 (-)
CI01000005_06481721_06483251 NA other downstream 577098 6481355 ~ 6483265 (-)
G39515 NA other downstream 1226048 5833792 ~ 5834539 (-)
G38415 NA other downstream 2659477 4381238 ~ 4401110 (-)
G38510 NA other downstream 2854379 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 5171311 1883222 ~ 1899867 (-)
G40487 NA other upstream 130495 7195795 ~ 7196428 (-)
G40540 NA other upstream 460921 7526221 ~ 7532148 (-)

Expression


Co-expression Network