CI01000005_07018058_07025374 (LGI1A, LGI3)


Basic Information

Item Value
gene id CI01000005_07018058_07025374
gene name LGI1A, LGI3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 7016841 ~ 7025374 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_07018058_07025374.mRNA
ATGGCTTTCAGGCGGACTGTGTTCTTCTGCCTGTTGTGTTTGTTGATGCTCGTGCACGGCAGCAGGAGGAGACAAGCGCGCTGTCCCACATCATGTACATGCAGTAAAGATAACGCCTTATGTGCCAATACCGGATCAATACCGAGGGGCTTCCCACCAGATGTCATCTCACTATCGTTCGTCAAGTCTGGCTTTACTGAAATCCCTAAAGAGAGTTTCATTCACACACCAGCCCTCCATCTGCTTCTTTTCACAGCAAACGTCTTTGATTCTATAAATGAAGATGTGTTTCTTGGTCTTCCTCATCTGGAGTATCTGTTCATTGAAAATAACCAAATCAAGTCCATATCGCCTTACGCCTTCAGAGGACTCAAGTCCTTAATACACTTGGATCTGAGAGGAAATCTTTTCAGCTGCGACTGTAAGTTAAAGTGGTTAGTCGACTGGATGTTTCATACAAATGCAACTGTGGATGAGATCTACTGCAATGGCCCAGAAGCTTACCAGGGCAAAAAGATCAATGACCTTGAGGCGCAGTCATTTGATTGCATAACAACAGATTTTCCGCTGTTGAAGTCTCTTGAATTTCAGTCCATTTCAGTCGAAGCTTTTGCATTTGGTGGTGACCAGTTTGTCGTATTCGCCCAGCCGTTCACTGGCAGGTGTAACTTCATGGAATGGGATCACGTGCAAATGGAGTTCCGAAACTTCGATAACATCACAAGTACGTCGTCGGTCATCTGTAAACCTCTAGTCATTGACAGTCAGCTCTTCATTATAGTGGCACAACTGTTCGGCGGCTCGCACATCTTCAAGAGAGACGTCTCGGCAAACAAATTCATCAAAATCCAAGACATCGACATTTTGAAAATACGAAAGCCAAATGACGTGGAAATCTTCCATGTGGACGGAGAGTCTTTCTTCATCATTGCCGACAGCTCCAAAGCTGGCTCCACGACTATTTATAAATGGAACGGCAATGGCTTCTACTCCCATCAGTCCTTGCACCCCTGGCACCGCGACACAGACGTGGAGTATCTAGACATTTCTGGCAAGCCTCATTTGATTTTGTCCAGCAGCTCTCAACGGCCGGTCATTTACCAATGGAGCAAGAGCACCAAGCAGTTTGAGCGGCGTACGGATATCCCAGAGATGGAGGACGTGTACGCGGTCAAACACTTCACTGTGAAGAGCGAGCTCTACATATGTCTGACCCGCTTCATTGGCGACTCCAAGGTGATGAAATGGGACGGCAGCATGTTCAGTGAGATCCAGACCATGGCCTCCCGTGGCTCCATGGTCTTCCAGCCGTTCTCCATCGCCAACTGGCAGTACGCCATCCTGGGCAGCGATTACGCCTTTACTCGGGTCTATCGCTGGGACGCAAAGAAGAGACAGTTTATTCACTTCCAGGAGCTGAACATTCAAGCACCCAGGGCTTTTTCTCTGGTGTTCATTGACAACAGGGAGTTTCTTCTTGGCTCTAGTTTTAAGGGGCAAACACGGATATATGAACACCTGGTCCTTGACTTGAGCAGCTGATTTGCTCCATCGGGACAGTTGAGAATAATCAAAGAATCTCACAAAACACGTCCAGGTCATATTTAACTCTAAAATCTAAAAAAAAAAGACATTTTTTTTTTTGTTGTTTAAAGTAAATAAAGCCCGTTTTAAAGTCACCATGAAATCAAAATTGACAATTCTTTTTTTTTATGGAATATTGCAGTATTTATTATTAATGACTTACTTTATTTCATTCATGTTCCTGGTAATCTTGAATCAGAATATCTTCTCCTCCCTCTTGCAGTATCTCTTCTCTTCTCTGATGACGAGGGCGGGGCAACCTGTCACTCACATGAGATCCACCAATAGCAAACCACAACCATCCAATCAATTCACCACGGACTAAATCAAGCCCCGCCCTACATTTGTTCTTGTTCCTGAAGCTGTTTCTCTCAGATATATGGCACAATAGGGAATGCCAACTTTAAGCTTTTTTGCCATGTATTATTATTTTTATGATTTAAGCAATTTAAACCTCTCAATTCTCCATAATGTAATGTAGTTTTTTTTTTTACTGTAATACAGTAATCGACATAAAAATGTCACCATGCATAAAAATCTTAATGGTTCAAAAATAGGCTTCATTTTCTTTATTTCTTATTTTGTCTAACTTTTGATTTTGGGATGAAATATGACCTGGATGTGTTCAGATTCACAGCATGAAGACTCTTTGCAGATGACTTGCATGATGGTGCCTTAATTAGGTACCGCCGCTGAAATTATTCATGTTGTTTTGTTTTTTTTAATGATCTTCTCAGTGCATTTCTCATTCATTTCTGTTGTATTTTTACATTGTGACTGATGTACTTTCATTGAAATACTTGCTATTCTATTTATTAATGTGTTTATCTCAAATGAATCTTGTTTACTTCTCTCTTAACTTGTAAACAATGTATTTTATGTGGCAGCTGGGTGACATATTTGATACGCAGATTGGGAATTTGAAATATACATCGACTTTTGGAGTAGTGTGTCGTGTGAACATTGTTTTTTAGCATTTGCCTGTTTGTTCGAACTGTATTAACTACTAACAGACAACCAATGTCAGTACTTTTTTCAACAAGATACAATTATTTGTTATGAGATGAAGAGATTCTATATCACCAAAAGATGAAACTGTGATGTTCTACTGGATAAGTTTGTGCATGCAGTTTCATGCCTACATTTTGGAGACACTGATACTAACTTTAAATAAA

Function

symbol description
lgi1a Predicted to enable catalytic activity. Acts upstream of or within brain development; locomotory behavior; and myelination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in digestive system; heart; immature eye; nervous system; and skeletal muscle. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-1; childhood absence epilepsy; and familial temporal lobe epilepsy 1. Orthologous to several human genes including LGI1 (leucine rich glioma inactivated 1).
lgi3 Predicted to be involved in regulation of exocytosis. Predicted to be located in extracellular region. Predicted to be active in synaptic vesicle. Is expressed in head; hindbrain; and spinal cord. Orthologous to human LGI3 (leucine rich repeat LGI family member 3).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_07018058_07025374.mRNA True 2759 mRNA 0.41 7 7016841 7025374

Neighbor

gene id symbol gene type direction distance location
CI01000005_06815976_06894322 SLIT1A, SLIT1 coding downstream 122256 6815378 ~ 6894585 (-)
CI01000005_06772433_06793278 NVL coding downstream 223563 6772433 ~ 6793278 (-)
CI01000005_06765592_06772165 NA coding downstream 244676 6765273 ~ 6772165 (-)
CI01000005_06721142_06724797 NA coding downstream 292008 6720908 ~ 6724833 (-)
CI01000005_06655061_06664135 NA coding downstream 352501 6654881 ~ 6664340 (-)
CI01000005_07035672_07037203 NA coding upstream 9403 7034777 ~ 7037276 (-)
CI01000005_07052874_07068345 NA coding upstream 27356 7052730 ~ 7068377 (-)
CI01000005_07093538_07094533 NA coding upstream 68108 7093482 ~ 7094569 (-)
CI01000005_07111233_07112234 NA coding upstream 85348 7110722 ~ 7112266 (-)
CI01000005_07143500_07144465 NA coding upstream 118108 7143482 ~ 7144565 (-)
G40408 NA non-coding downstream 16969 6999253 ~ 6999872 (-)
G40407 NA non-coding downstream 18498 6997582 ~ 6998343 (-)
G40382 NA non-coding downstream 71269 6943111 ~ 6945572 (-)
G40379 NA non-coding downstream 77547 6939091 ~ 6939294 (-)
G40378 NA non-coding downstream 78187 6938427 ~ 6938654 (-)
G40402 NA non-coding upstream 35213 7060587 ~ 7065300 (-)
G40472 NA non-coding upstream 129987 7155361 ~ 7155615 (-)
G40497 NA non-coding upstream 194637 7220011 ~ 7220359 (-)
G40499 NA non-coding upstream 197233 7222607 ~ 7222893 (-)
G40503 NA non-coding upstream 206232 7231606 ~ 7231852 (-)
CI01000005_06481721_06483251 NA other downstream 533352 6481355 ~ 6483265 (-)
G39515 NA other downstream 1182302 5833792 ~ 5834539 (-)
G38415 NA other downstream 2615731 4381238 ~ 4401110 (-)
G38510 NA other downstream 2810633 4204845 ~ 4206208 (-)
CI01000005_01883894_01899867 NA other downstream 5127565 1883222 ~ 1899867 (-)
G40487 NA other upstream 170421 7195795 ~ 7196428 (-)
G40540 NA other upstream 500847 7526221 ~ 7532148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005669 lgi1a coding NC_007124.7 CM002897.2 421231 ~ 430143 (+)