XLOC_005669 (lgi1a)


Basic Information

Item Value
gene id XLOC_005669
gene name lgi1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 421231 ~ 430143 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011273
GCGTCCGTGACTCTGATTGTGTTTGTATGGATGGATGCTGCTACCGCTGGTGCAGATCATAACGGATCCGCCTCACAATAATCGCCGTGTAATATCTGCTCATCTTGAGCCGTCGCTTCGGTGCCGTGTGCCGGTGATGAGCCCCCGGTGAGCGGCTGTGTGTCCGGGATGATGTGTTTGCGGCGGGCGGCGGTGCTGTGCGTGCTGCTGGCGGCGCTGGTGCTCGGCGGCCGGAGGAGGAGCTCCCGCTGCCCCGCGCCCTGCACCTGCAGCAAGGATAACGCGTTATGCGCCAATACCGGAGCCATACCGAGGAGCTTCCCGCAGGACGTCATCTCACTATCATTCGTCAAATCCGGCTTTACTGAGATCCCCAAAGAGAGTTTCATTCACACACCTGCACTACACCTGCTTCTCTTCACAGCAAACAGCTTCGACTCTATAAACGAGGATGCGTTCCTCGGTCTCCCTCATCTGGAGTATCTATTCATTGAAAACAACCAGATCAAGTCCATATCGCCGTTCGCCTTCAGAGGACTCAAGTCTTTAATTCACCTAAGTCTGGCGTACAATAATCTGGAGACGCTGCCCAAAGACCTCTTCAAGGGGATGGAAGCTTTGACTAAAGTggatcTGAGAGGGAATCTGTTCAGCTGTGACTGTAAGCTGAAGTGGTTGGTGGACTGGATGTTTCACACAAACGCTACAGTGGATCAGATCTTCTGCAACGGCCCTGAAGGGTACCAGGGGAAAAAAATCAACGATCTGGAGGCGCAGACCTTCGACTGCATCACCACAGATTTTACCCTGCTGAAGTCTCTGGAGTTTCAGTCCATCTCAGTGGAGGCTTTTTCCTTCGCTGGTGATCAGTTCGTAGTTTTCGCTCAGCCCTTCAGCGGCAGATGCAGCTTCATGGAGTGGGATCACGTGCAGATGGAGTTCAGAAACTTCGACAACATCACGAGCACATCCACGGTCATCTGCAAACCTCTAGTCATCGACAGCCAGCTCTTCATCATAGTAGCTCAGCTGTTCGGCGGCTCGCACATCTTCAAGCGCGACGTCTCCGCAAACAAATTCATCAGAATCCAAGACATCGACATCCTGAAGATCCGCAAGCCCAACGACGTGGAAATCTTCGAGGTAGACGGAGAGTCCTTCTTCATCATCGCCGACAGCTCGAAAGCTGGCTCCACCACCATCTATAAGTGGAACGGAAACGGGTTTTACTCCTACCAGTCGCTCCATCCTTGGCACCGCGACACCGATGTGGAGTATCTGGACATTTCTGGAAAACCGCATCTGATTTTATCCAGCAGTTCGCAGAGGCCTGTTGTTTACCAGTGGAGCCGGGGCAGCGCTCAGTTCGAGAGGCGCACTGACATCCCGGAGATGGAGGATGTGTTCGCGGTCAAACATTTTACGGTGAAAAACGAGCTGTACATCTGCCTGACGCGCTTCATCGGCGACTCCAAAGTGATGCGGTGGGATGGCAGCATGTTTACAGAGATCCAGACCGTGGCTTCCCGGGGCTCCATGGTGTTCCAGCCGTTCTCCGTGGCCAGCTGGCAGTACGCCATCCTGGGCAGCGATTACGCCTTCACACGGGTCTACCGCTGGGACGCCAAGAAGAGGCAGTTCGTTCCCTTCCAGGAGCTGAACATCCAGGCGCCCAGGGCTTTCTCTCTGGTGTTCATCGATAACAGGGAGTTCCTGCTGGGGTCCAGTTTTAAGGGGCAAACGCGGATATATGAGCATCTGGTGCTGGACCTGAGCAGCTGAAGACACTCATGAAGCTGCTGTTCAGTGGAGACACCGAGGTCATGTTTCATCCTCAAATCCTACTTTGTATTTCCATTATTTTATGAGAGAGAGCATATTAACCCaaagattaatattaaataaattgagtaaatcaGGCTCagatcctgtagtgtgaactaggcattacatcGTCAGGAGTGGGCCCGACTCAGCATGTAGAATCACCTTTGGTTTCGGGATGAAACATGACCAGGATGTTCTGCTTCTCAGCATGAAGACTCTTCCAGACTCTCTGCATGCTGGAGCCGCTAAATGAGATTGTGTTTTGAAATGATCGATTAACGTCTGttgtatttttactttgtgaCTGCCgtactttctttaaaatactcGCTCTTCTATTTATAAACGTGTCTATCTGGACATCTCTCGacctgtaaatacagtatttttatgtGGTGACTTATATTTGATATGCAGGCTGTAGATTTGATACACATGTTGAGCGTTTGGTTTATAAAGTAGCGTGTCGTGTTCTCATTGGTTTttagcatctgtgtgtgtgtttggactgtggaataATGGCCTGATGTCAGTACGTTTTCAGCAGGATGCCATGATTTGAAGCAATTCTGTCCACAAATGACATTATTCTGGGTTTGTGCATGCAGATTCATGCCTACACTTTTGGAAACTCTGATACTAACTTTAAATAAAGATTTGTCAGAATGTTAAACCTTT

Function

symbol description
lgi1a Predicted to enable catalytic activity. Acts upstream of or within brain development; locomotory behavior; and myelination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in digestive system; heart; immature eye; nervous system; and skeletal muscle. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-1; childhood absence epilepsy; and familial temporal lobe epilepsy 1. Orthologous to several human genes including LGI1 (leucine rich glioma inactivated 1).

GO:

id name namespace
GO:0042552 myelination biological_process
GO:0007626 locomotory behavior biological_process
GO:0007420 brain development biological_process
GO:0005575 cellular_component cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1731 Predicted to enable catalytic activity. Acts upstream of or within brain development; locomotory behavior; and myelination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in digestive system; heart; immature eye; nervous system; and skeletal muscle. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-1; childhood absence epilepsy; and familial temporal lobe epilepsy 1. Orthologous to several human genes including LGI1 (leucine rich glioma inactivated 1).

Ensembl:

ensembl_id ENSDARG00000020493

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011273 True 2505 mRNA 0.50 8 421231 430143

Neighbor

gene id symbol gene type direction distance location
XLOC_005668 CU570800.2 coding upstream 3603 416648 ~ 417628 (+)
XLOC_005667 CU570800.3 coding upstream 8614 411607 ~ 412617 (+)
XLOC_005666 CU570800.4 coding upstream 13586 406635 ~ 407645 (+)
XLOC_005665 FO904836.1 coding upstream 17118 403103 ~ 404113 (+)
XLOC_005664 CU633838.1 coding upstream 57977 330555 ~ 363254 (+)
XLOC_005670 CABZ01061569.1 coding downstream 8204 438347 ~ 438462 (+)
XLOC_005671 NA coding downstream 41405 471548 ~ 704338 (+)
XLOC_005672 fbxo28 coding downstream 52768 482911 ~ 490569 (+)
XLOC_005673 degs1 coding downstream 72087 502230 ~ 514843 (+)
XLOC_005674 wu:fc17b08 coding downstream 104310 534453 ~ 545653 (+)
XLOC_005661 NA non-coding upstream 151914 268042 ~ 269317 (+)
XLOC_005659 NA non-coding upstream 178612 242088 ~ 242619 (+)
XLOC_005656 NA non-coding upstream 211499 202760 ~ 209732 (+)
XLOC_005653 NA non-coding upstream 398056 20646 ~ 23175 (+)
XLOC_005652 NA non-coding upstream 400652 18808 ~ 20579 (+)
XLOC_005675 NA non-coding downstream 123448 553591 ~ 560985 (+)
XLOC_005685 NA non-coding downstream 428914 859057 ~ 861896 (+)
XLOC_005687 NA non-coding downstream 542866 973009 ~ 986263 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_07018058_07025374 LGI1A, LGI3 coding CI01000005 null 7016841 ~ 7025374 (-)