XLOC_005659


Basic Information

Item Value
gene id XLOC_005659
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 242088 ~ 242619 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013522
GTGTGTGTCAGCAGATAAACACTGATGTAGACACTGGAGCTGCCGTCTCTGTCCCCCGTTGTAACGTGCAGAACTCTGTCTTCAGCTCTCTGTGGGCTGGTTTGACTCCGGGTCTTCTCTGAACACACTCACCTGAGCTGGCTGCGGTTCAGCAGGGGCAGGTAGTCAGGGATGGAGATGTAGATGAAGCTCTGGGCCTCCTGGATCACTCTGCTGATGGCCTCCAGGTCTTTGGTCCGCTCTCGAGTGCAGAAAACATCTGGAGAAGTCTAGAAAACACGAACATGCTCGGCTTCATCACTGAGCAGAATATTAACGCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013522 True 320 lncRNA 0.53 2 242088 242619

Neighbor

gene id symbol gene type direction distance location
XLOC_005658 cfap36 coding upstream 3713 233482 ~ 238375 (+)
XLOC_005657 zgc:64201 coding upstream 13066 228045 ~ 229022 (+)
XLOC_005656 NA coding upstream 32356 202760 ~ 209732 (+)
XLOC_005655 ewsr1b coding upstream 63324 159504 ~ 178764 (+)
XLOC_005654 dnaaf2 coding upstream 128247 111212 ~ 113841 (+)
XLOC_005660 foxg1d coding downstream 12448 255067 ~ 257821 (+)
XLOC_005661 NA coding downstream 25423 268042 ~ 269317 (+)
XLOC_005662 mpc1 coding downstream 38595 281214 ~ 285151 (+)
XLOC_005663 irf1a coding downstream 68761 311380 ~ 318827 (+)
XLOC_005664 CU633838.1 coding downstream 87936 330555 ~ 363254 (+)
XLOC_005653 NA non-coding upstream 218913 20646 ~ 23175 (+)
XLOC_005652 NA non-coding upstream 221509 18808 ~ 20579 (+)
XLOC_005670 CABZ01061569.1 non-coding downstream 195728 438347 ~ 438462 (+)
XLOC_005671 NA non-coding downstream 228929 471548 ~ 704338 (+)
XLOC_005675 NA non-coding downstream 310972 553591 ~ 560985 (+)
XLOC_005685 NA non-coding downstream 616438 859057 ~ 861896 (+)

Expression


Co-expression Network