XLOC_005655 (ewsr1b)


Basic Information

Item Value
gene id XLOC_005655
gene name ewsr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 159504 ~ 178764 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011262
ATGGCGTCAGTCACGAATTATAGCAGCTACAACCAAGCTGGAGCACAGCAGTCGTATGGCTCATACACAGCACCTCCTGCTCAGACATATGGACCGGCTGCACAGcagggATATACTCAGCAAGGTTACAGCTCCTATGCTCAACCCGCTGCTGCACCTGAGGCCACCTACAGTCAGGCAGCGCCCGCTGCTGGAGCGTCAGCGCAACAGCAATACGGATCTACATACGGGCAAGCAGCCGCAACAGCGGCTGCAGCACCAGCTGCATATGGAACTCCACAGCCAGGAGCCTATACTCAGCCTGCACAGAGTTACAGGGCCAGCAGCTACACCGGCTCCACTGCTGCCCCTGCTGCTCAGGCTTCCTATGGCTCTCAGCCCGGATGCTCCACCCAGCCGGCCTATTCTGGCTACAGCCAGCAGCCTGCTCCCTCCGCTCCTCAGAGTGCAAGCAGCCAGCCGGCCTACAACCAAAGTGCCTATTCGCAGCCTGCAGGCTATTCTCAGCCAGGATACCAGGCTCAGCAACCGGGCTATGGACAACAACAGCAGAGTGCTTATGGACAGGGACAACTACCTCAACAGCACCAGCAAGGCCCGCCAGCTGCCTACCCTCCTCAGGGGAGCAGTTCCTATGCACAGACTCAGTACGGCCAACAGAGTGCGCCACAGAATGATTACCAGCAAAACCCTTATAACAGTTACAGCCAGGGTGGCGTGAGCGGAGGTTACCCAGGGTCACAGCGTGGTGGATACCAGGATGGTGGCCGAGATGGATATGGCCGTGGAGGTCCTCGAGGCCGTGGTATGGGCGGCGGTGGCATGGGCATCGCTGGAGACAGAGGGGGCTTCAATAAGCCTGGTGGACCCATGAGGGGTGGAATGGATCGTGATATGGGCTGGAACGGTGGCCCTCAACCAGGAAATGTGCAGAAAAGAGCTGGAGACTGGGAATGTCCTAACGTtggTTGTGGAAATCAGAACTTCTCCTGGAGAATGGAGTGTAACCAGTGTAAAGCTCCAAAACCCGAAGGCCTTGGAACTTCTCCTCCCTTTTATCCAGGAGGTGAACGTGGCAGGGGTGGCATGAGGGGCGGCAGGGGCATGGACCGTGGTGGGTCGGAAGGAATGCGTGGAGGCTGGGGAGGAGATCGCGGAGGCTTCAGAGGCCGTGGTGGGATGGATAGGGGCGGATTCAGAGGAGGTAGCAGGTGTGGTCCTCCCATGGACAGAGGCAGAAGAGGCATGGGACCCCCAGGCAAGATGAAAATGAGGGATCATCGTCAGGAGCGCAGGGAAAGACCCTACTGA

Function

symbol description
ewsr1b Predicted to enable RNA binding activity and transcription coregulator activity. Acts upstream of or within central nervous system neuron development and mitotic cell cycle. Predicted to be active in nucleus. Is expressed in fin bud; gut; nervous system; and trunk. Human ortholog(s) of this gene implicated in Ewing sarcoma. Orthologous to human EWSR1 (EWS RNA binding protein 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1600 Predicted to enable RNA binding activity and transcription coregulator activity. Acts upstream of or within central nervous system neuron development and mitotic cell cycle. Predicted to be active in nucleus. Is expressed in fin bud; gut; nervous system; and trunk. Human ortholog(s) of this gene implicated in Ewing sarcoma. Orthologous to human EWSR1 (EWS RNA binding protein 1).

Ensembl:

ensembl_id ENSDARG00000117011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011262 True 1311 mRNA 0.59 13 159504 178764

Neighbor

gene id symbol gene type direction distance location
XLOC_005654 dnaaf2 coding upstream 45663 111212 ~ 113841 (+)
XLOC_005653 NA coding upstream 136329 20646 ~ 23175 (+)
XLOC_005652 NA coding upstream 138925 18808 ~ 20579 (+)
XLOC_005651 ppp4r3b coding upstream 144151 9100 ~ 15353 (+)
XLOC_005656 NA coding downstream 23996 202760 ~ 209732 (+)
XLOC_005657 zgc:64201 coding downstream 49281 228045 ~ 229022 (+)
XLOC_005658 cfap36 coding downstream 54718 233482 ~ 238375 (+)
XLOC_005659 NA coding downstream 63324 242088 ~ 242619 (+)
XLOC_005660 foxg1d coding downstream 76303 255067 ~ 257821 (+)
XLOC_005661 NA non-coding downstream 89278 268042 ~ 269317 (+)
XLOC_005670 CABZ01061569.1 non-coding downstream 259583 438347 ~ 438462 (+)
XLOC_005671 NA non-coding downstream 292784 471548 ~ 704338 (+)

Expression


Co-expression Network