XLOC_005652


Basic Information

Item Value
gene id XLOC_005652
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18808 ~ 20579 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013374
TGAGGGTTAAACCGCAACACTGCACATCAtcttcctcttcatcatcagtGGATctaactctctcacacacacacacacacacacacacacacacacacacacacacacacactctacaagACAgtttagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtttccAGACACCGACGCTCAGTTTCCTCCCTCCGGATGTTCCCTACTAAGGGAACAGGCGCACAGTGGGCGTGTTCACACACTACCCCTAGGAAGGCAGCATGCAGAACCCTTAACATGAGTGCAGAACAAGAGGGAaataagagagtgtgtgtgtgttactgcgcgcttactgtgtgtgtgtgtgtgtgttactgtatatgaCTGTGTAATAGCGCGGGTCTGCTCCAGATGCGCGGTCAGGGCTCTGCAGCGTCACTCCCGTTATGTGTGGCGGAAGTGGAGCAGTAaatcagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgctgTACTACAGGCGGCGCTTTGTTCAGTCGCACACCCGCCCGTGCCCGACACACACTCACTGAAACACACTCGAGGCGCGTTTCCCGTTGGAAGCTCGACACGTCACGGCGGATTAAGCGGAAAACGGCGGCTTTTCATCCGGGATGTGGAGACCGAGCGCGCCGCGGGAATAACGGGGATCCGCCCGCAGCGCGTCTGCAGTCGGGCTCGGTTTTGCGCTTCGCCgcccagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgaccgtgtgtgtgtgcctatgtatgagagagagagagaccgatTGAGGCGATGAGCGCGCGATAAACTCTCCGCTTCCCGACGCGCCGCCGGTTACCGGGCCTCAGGATGGAGGTTTTCTCGCCGCTGTTGGAGGAGTTCATCCGGTCTCCGCTGGTCTGCTGGgTGAAGACGGTGGAGCGGCTGCTGACCGACGGCTCCCCGCTGGCCGAGTTCATGGCGCTGGCGGACGGCGTGTTTCTGAACGACATCATGATCCGGATTGTTGTGCGCTGTCTCTGTGTCTCAGTGCTGATCTGCTTCCTGCAGTGTTTCTGTATTTCCTGTCTGGCAGCGGTTCAGTTCCTGCTGGAGATGAAGGCTGCAGGTCAGTGGTGTCCACACTGGAGGTCCTGCAGAGTCCAGCAGGTGTGTCTGATCTGGCCTGAACTCTGCAGAGCAGCGGCTCTCCAGAAGCCCCAGTGTAGACACCACTGACCGCCGAGGAGGATCACACACAcccgcgtgtgtgtttgtgtgtgtgtgtgttcagtggcTGTATTTCGTGTGTGGATatctgagcgtgtgtgtgtgtgtgtgagtgtgagttgctcttcagtgtgtgtgt

Function

GO:

id name namespace
GO:0045103 intermediate filament-based process biological_process
GO:0045104 intermediate filament cytoskeleton organization biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043009 chordate embryonic development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0048880 sensory system development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013374 True 1400 lncRNA 0.56 3 18808 20579

Neighbor

gene id symbol gene type direction distance location
XLOC_005651 ppp4r3b coding upstream 3455 9100 ~ 15353 (+)
XLOC_005653 NA coding downstream 67 20646 ~ 23175 (+)
XLOC_005654 dnaaf2 coding downstream 90633 111212 ~ 113841 (+)
XLOC_005655 ewsr1b coding downstream 138925 159504 ~ 178764 (+)
XLOC_005656 NA coding downstream 182181 202760 ~ 209732 (+)
XLOC_005657 zgc:64201 coding downstream 207466 228045 ~ 229022 (+)
XLOC_005659 NA non-coding downstream 221509 242088 ~ 242619 (+)
XLOC_005661 NA non-coding downstream 247463 268042 ~ 269317 (+)
XLOC_005670 CABZ01061569.1 non-coding downstream 417768 438347 ~ 438462 (+)

Expression


Co-expression Network