XLOC_005657 (zgc:64201)


Basic Information

Item Value
gene id XLOC_005657
gene name zgc:64201
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 228045 ~ 229022 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011263
ATGGACCAATCAGAGCTCGTTGAGGCGGTGAGTGAAGCTGGTGGAGCCGCGGTGGCGCCTGTCGACCTGAGGAAAGAGTTGGAGGAGTTTCTAAAACGGCTGAACATCGAGACGACCTGCATCGAACACCCAGAGgtgTTTACAGTGGAGGAGATGATGCCCCATGTGTCTCACCTGAGCGGTGTCGTCACTAAAAACCTGTTCCTGAAGGATAAGAAGCGGCGTGTGTTCCTGGTGTGTGTGCGTCACGACCGGCCCCTGGCCCTGGGTGAGCTGTCCCGCCGGCTGGGGGCCCCGAATCTGCGCCTGGCGGAGAAGCGTCTGCTGCTGGAGAAGCTGAGGGTCCGGCAGGGCTGCGTGACCCCGCTGGCACTGTTCCTGGACACCGAGCGCAGCGTGACGGCGGTGCTGGACCGAGAGCTGACCCACggcggacacacacacatacactgccaCCCCATGACCAACAGCGCCACCATGGGGATCACACCCGCCGACCTGCTGCGCTTCCTGGAGGAGACCCAGCACACACCCGTCATCCTGAGCTtcgactga

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1402 Predicted to enable aminoacyl-tRNA editing activity. Orthologous to human PRORSD1P (prolyl-tRNA synthetase associated domain containing 1, pseudogene).

Ensembl:

ensembl_id ENSDARG00000101636

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011263 True 555 mRNA 0.62 2 228045 229022

Neighbor

gene id symbol gene type direction distance location
XLOC_005656 NA coding upstream 18313 202760 ~ 209732 (+)
XLOC_005655 ewsr1b coding upstream 49281 159504 ~ 178764 (+)
XLOC_005654 dnaaf2 coding upstream 114204 111212 ~ 113841 (+)
XLOC_005653 NA coding upstream 204870 20646 ~ 23175 (+)
XLOC_005652 NA coding upstream 207466 18808 ~ 20579 (+)
XLOC_005658 cfap36 coding downstream 4460 233482 ~ 238375 (+)
XLOC_005659 NA coding downstream 13066 242088 ~ 242619 (+)
XLOC_005660 foxg1d coding downstream 26045 255067 ~ 257821 (+)
XLOC_005661 NA coding downstream 39020 268042 ~ 269317 (+)
XLOC_005662 mpc1 coding downstream 52192 281214 ~ 285151 (+)
XLOC_005670 CABZ01061569.1 non-coding downstream 209325 438347 ~ 438462 (+)
XLOC_005671 NA non-coding downstream 242526 471548 ~ 704338 (+)
XLOC_005675 NA non-coding downstream 324569 553591 ~ 560985 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_07591912_07592984 NA coding CI01000005 null 7591912 ~ 7592991 (-)