XLOC_005675


Basic Information

Item Value
gene id XLOC_005675
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 553591 ~ 560985 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013526
gtttaagctggatttttcagcagggagttgTGTCATTTTGAAAGCAAAGAGACATTTGCTGCGTCCCAATCCGCATAGCTTTGGGACAAACTGTTTCCTCATTAACAGACCGTTCTGTTGCTTAACTAACTTAGTCAATCATctccacacatcatccacattccTTTCATGTGTAATTACCTTCGTTATTGTAGGTTCCGCATTGTAGGTTAATTTTCCGTTCGCGAGTCTGTCatcagagaaatctcctcaggtgtttGGATAATTACGCAGAGTTCAGAAGTGaccaaacacgtctttatagaAGTCCACACTGTTGTTGCAGATGAATAAAACACGGAAAACGTGATTTAAAgattttccagttggctagatattaattaatagtcattcaaacaactttaccgaagcctctctagttgacggttggtctcgctcgtccgccatgtttgtagtttgtttacactttttacccgcatttgtagttctaatcgaattcacgtCCAGCGCCTAATGTGATGATTAGTAGTTTGTGTGCAGAATGCACTGCATATTTCTACCAGAAATAGTACATTTATAACCTTTGGCACACTCTTTTCAACATAATACGGTTTGGAACACACTGATTTCTATAATATCTTTctaattttactcattttaattagcttttcatttacaatcatatcTGAATTGGGACGTAgcaattgtttgttttgacaacTTGACGTAAACAAATACAccacaacctgtttttgtctgTCATGATAACTTGAcctcataaatctgtcataaacatgactgaagcattatagatgttttacattttataaaagcatctttaatatttttttgagcTCAGCATCAGTGCCACAAGCTGAATTTGCCATTAAAatctcattaaatattaatgaagctCTTAAAAATAATCTGGCAGAGGAATGACACTTAACGagacattttaatgtcaaatacAGTGAAAACAtgttcagaaaaatattcatgactcTTATAATGcctcatgacagtcatgtttatgacagatttcgttgtcttggtaatgtcaagttgtcatgaaacAGGTTGTGATGTGTTTGTCTACATCAAgctgtcataacaaacaatgtcatcttaaAATGACCTAACTGAGCGAATGACACCTAATAACAGTtgccataagcatgcataaaatcttatGTCATGTCATGAATATAAAGGCTTCATGACAGTCCTATGAACACCCCTTGAAGTAAAGCGTTTCTCTATTTTCTGCTCAGCAGTGCTAATATTAACCACAATCCAGACACCACATGACGATGAGCATGCATCTTAGAAACAGTGATGAGATCTATCTAGCGCTTGATTTCTGCTCTCACTTACATTCTGTCGGGTTTCCCTTTGAGGTAATGGAATGACAAAACACTGTGTGGAAGTGATTCATTTGACTTTTTCTACCGAAAGTCCAGAAATTGTCAAGAAGCTCCTCTGGTGACTGCATAAGGAGTGTGGAATGGGGGTTCGCCAGCGGCTGGTCGCAGTGCTGCCCGCTCCAGCCCGGCTGGCAGTGGCACACAGGCCCGGTGGCGGTGTTGGGCTGGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013526 True 1597 lncRNA 0.39 2 553591 560985

Neighbor

gene id symbol gene type direction distance location
XLOC_005674 wu:fc17b08 coding upstream 7938 534453 ~ 545653 (+)
XLOC_005673 degs1 coding upstream 38748 502230 ~ 514843 (+)
XLOC_005672 fbxo28 coding upstream 63022 482911 ~ 490569 (+)
XLOC_005670 CABZ01061569.1 coding upstream 115129 438347 ~ 438462 (+)
XLOC_005669 lgi1a coding upstream 123448 421231 ~ 430143 (+)
XLOC_005676 tp53bp2a coding downstream 85715 646700 ~ 664472 (+)
XLOC_005677 CU462915.1 coding downstream 108192 669177 ~ 670746 (+)
XLOC_005678 cutc coding downstream 113366 674351 ~ 678456 (+)
XLOC_005679 abcc2 coding downstream 120643 681628 ~ 711576 (+)
XLOC_005680 cox15 coding downstream 152956 713941 ~ 724385 (+)
XLOC_005661 NA non-coding upstream 284274 268042 ~ 269317 (+)
XLOC_005659 NA non-coding upstream 310972 242088 ~ 242619 (+)
XLOC_005656 NA non-coding upstream 343859 202760 ~ 209732 (+)
XLOC_005653 NA non-coding upstream 530416 20646 ~ 23175 (+)
XLOC_005685 NA non-coding downstream 298072 859057 ~ 861896 (+)
XLOC_005687 NA non-coding downstream 412024 973009 ~ 986263 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 1204522 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 1422326 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 1588785 2149770 ~ 2153016 (+)

Expression


Co-expression Network