XLOC_005674 (wu:fc17b08)


Basic Information

Item Value
gene id XLOC_005674
gene name wu:fc17b08
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 534453 ~ 545653 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011278
TGCTCACTGGAGAAAATGGCGAATTTGGCAACCAAGCGGCTCTGCACGAACGAGAGGTTTCCAGTTCGCCAGGATTCGGATTGCTGGAGGTCTAAACTCATTCGCAGTGTGGGTCTTGACAGAATCTCAGATTTGCTTCTTAGGACACAAATTCTGGACGATCTCAGGCTTTTGAAAGATTGTAAGCCTGCGAGCGTGTCACATTCATCATTTGATGAAAAATGTCTTTTCTGCTGCTTAAGACGAGAAAAAGTGaagGAGCATATAACTGCACTCAACAAGCAGATTGTGGAAAGTGGAGGAAAACCTTTACTAGGTAAAGACCCTTCTAATATCAGCAGGCTCGAGTGGCAGTCCGATGAATTCCTCAGCGCAGTGTTACACAGAAATGAATACACACCAAGAATTCCCGATCCGCACATCCCCGTGGTGGCTTGTGGTGTCATGCAGCAGATGCTCAGCAAGTTAACTACATACTATACCTCAAGAAACAGCTGCTCTCAGGACTCCCTTCAAACCAATGGAAAAAAGGACCAAAGCCTTGTGAAAACCAGCCGAGTCTCTTCATCTGCTGCTGTCGGTGCATTATCTGCTCAGAATAAGTTCATCATGGTGGACCAAGACGCCCCGCTGGACCTCTCTGTGAAGAAGATTAAAGTAGAGGACATCCAGCAAGATGGAGTTCTTGATCTTTCAACTAAGAAGAATTTAAGCAAAGACCATTTGTGTTTAAAGAACTCTCCAGTCCACGTCAGTCCGGCTGCACGGTTGGTTAAAagGGACTCCATCGATCTGAGTCTTGCCCAAGTGGGGGATCTACAGTCGGCCTCCACTTTGGAACAGTTCATGTCTAAGCTGTGTTTGCATCATCAGCATCAGATAGTTGACGCATTAGGCTTCTTACAAAGCGAAGTCAAGACCGTGTCCAACCATTTCCAAACACCTATTTCAACTTTGCCCGAGAAGCAAGCAACAACCAGCAGCAGTATTGTGTCCTCTGAAAGCAGGTCCGAGGTTCAGCGGCCTGAAAGAACTTGCTCTGTGGATGCTGCTTTGAGCATTAAGACTCAATCTGTTGCTAGAAGTCAAAAAACTACTTCAGAGGATTTAAACGCTGATGTTAGCAGTATTGCAACCAGTGAAAAA
>TCONS_00011279
ACTGGAGAAAATGGCGAATTTGGCAACCAAGCGGCTCTGCACGAACGAGAGGTTTCCAGTTCGCCAGGATTCGGATTGCTGGAGGTCTAAACTCATTCGCAGTGTGGGTCTTGACAGAATCTCAGATTTGCTTCTTAGGACACAAATTCTGGACGATCTCAGGCTTTTGAAAGATTGTAAGCCTGCGAGCGTGTCACATTCATCATTTGATGAAAAATGTCTTTTCTGCTGCTTAAGACGAGAAAAAGTGaaggtagtttttttttgttgttcatttacATTTTCCCCCTTCTTTCCTGAAATGTCAAGACACCTTGGCAGAACCGTTTTGATCTACCTTTGTTGTTCTTGCTCTAGCTATGCTATGGatgttaatttgtatgttaatttcATCCTCCATGCTTAATGAATGCATTTTAGTACAtgttgcatgtgtgtatgtaGAAGAACACACCTCCgcctttattatcttgtttttcCCTCGTCGACAGGAGCATATAACTGCACTCAACAAGCAGATTGTGGAAAGTGGAGGAAAACCTTTACTAGGTAAAGACCCTTCTAATATCAGCAGGCTCGAGTGGCAGTCCGATGAATTCCTCAGCGCAGTGTTACACAGAAATGAATACACACCAAGAATTCCCGATCCGCACATCCCCGTGGTGGCTTGTGGTGTCATGCAGCAGATGCTCAGCAAGTTAACTACATACTATACCTCAAGAAACAGCTGCTCTCAGGACTCCCTTCAAACCAATGGAAAAAAGGACCAAAGCCTTGTGAAAACCAGCCGAGTCTCTTCATCTGCTGCTGTCGGTGCATTATCTGCTCAGAATAAGTTCATCATGGTGGACCAAGACGCCCCGCTGGACCTCTCTGTGAAGAAGATTAAAGTAGAGGACATCCAGCAAGATGGAGTTCTTGATCTTTCAACTAAGAAGAATTTAAGCAAAGACCATTTGTGTTT

Function

symbol description
wu:fc17b08 Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2746 Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000094249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011278 False 1146 mRNA 0.46 7 534453 545653
TCONS_00011279 True 964 lncRNA 0.43 5 534458 544116

Neighbor

gene id symbol gene type direction distance location
XLOC_005673 degs1 coding upstream 19610 502230 ~ 514843 (+)
XLOC_005672 fbxo28 coding upstream 43884 482911 ~ 490569 (+)
XLOC_005670 CABZ01061569.1 coding upstream 95991 438347 ~ 438462 (+)
XLOC_005669 lgi1a coding upstream 104310 421231 ~ 430143 (+)
XLOC_005668 CU570800.2 coding upstream 116825 416648 ~ 417628 (+)
XLOC_005675 NA coding downstream 7938 553591 ~ 560985 (+)
XLOC_005676 tp53bp2a coding downstream 101047 646700 ~ 664472 (+)
XLOC_005677 CU462915.1 coding downstream 123524 669177 ~ 670746 (+)
XLOC_005678 cutc coding downstream 128698 674351 ~ 678456 (+)
XLOC_005679 abcc2 coding downstream 135975 681628 ~ 711576 (+)
XLOC_005661 NA non-coding upstream 265136 268042 ~ 269317 (+)
XLOC_005659 NA non-coding upstream 291834 242088 ~ 242619 (+)
XLOC_005656 NA non-coding upstream 324721 202760 ~ 209732 (+)
XLOC_005653 NA non-coding upstream 511278 20646 ~ 23175 (+)
XLOC_005685 NA non-coding downstream 313404 859057 ~ 861896 (+)
XLOC_005687 NA non-coding downstream 427356 973009 ~ 986263 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 1219854 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 1437658 1983311 ~ 2033043 (+)

Expression


Co-expression Network