XLOC_005676 (tp53bp2a)


Basic Information

Item Value
gene id XLOC_005676
gene name tp53bp2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 646700 ~ 664472 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011280
GAGGAGAAAGAAATAATATTAATCTTTTTATCAATCTTGATCGAACACTttcaacatataaataaacacacgTCGATATTCGTCATCTGTCGACTAACCAAAACTCTGGCGGAAGGAAAGTTTGGGAAGGCCTCTGACGTCACAGTTTCGGGACTTGTTTTGTTTCACACAAGAATGGCGTTTTTTGATTAACATCCCGTCTAATACCTTCACCAAACCAGTGAAAGTCGGATATTATAACTCCTGTTGACGTTTTCTGGAGCGACGCGAAGATGATGCCTATGTTCCTGACGGTGTACCTCAGCAATAATGACCAGCACTTCAGCGAGGTGCCGATCACTGCAGAGACGGTGTGTGCAGACGTGCTGCAGCTCTGCCGGGAGCCGGGAGAAAACAGCAGCTGCTATCTGAGTGAAGTGTGGAGAGGATCAGAGCGAGTGGTCGGTGAgaatgagaagatgatggatctGCTGCTGCAGTGGGGTCAGCAGCGGCCAGAGGTTCGCTTCTTTCTGCGGCATGGCAGAGCCGCCAGCCAACCCTCAGactcCAGGACTCAGAAGAGGAACGGTGTGAAGAAACCTGCAGACAGACGCCTGGAGAACGGGgtgaaCGGGCCGTGGATGGACATGACTCTAGCAGAGCTGCAGGAGATGGCGTCTCGACAGCAGCGTCAGATCGACTCTCAGCAGCAGCTGCTGTCCACCAAGgagCAGCGTCTGCGTTACCTCCAGCAGCAGGAGCAGAGGCAGGCCCAGAGCTCCTCAGAGCAGAAGAAGCTCCTTCAGCTGCGGGAGACGCTGGAGCAGCAGGAGGCGCAGCTGAAGATGGTGCGTGCCCTGAAGGGGCAGGTGGAGCAGAAGAGACTCAGCAACGGGAAACTGGTTGAGCAGGTGGAGCAGATGAATAATCTCCTCCATCAGAAGCAGAAGGAGCTGGTGGTGGCTGTGGCTAAAGTGGAGGAGCTGAGCAAACAGCTGGAGACGCTGAAGAGCGGACAGATGGATGCCATGAACAGTAATCACAGCTCTGTGGCCGAGCTGGACAGACTCTACAGGGAGCTGCAGATGCGGAAAAACCTGAACGTGGAGCAGAACGCTAAACTGCAGCAGCAGCGCGAGAACCTGAACAAGAGGAACCAGGAGGTGGCTAACATGGACAAACGTGTCAGTGAGCTGCGCGAGCGCTTGTGGAAGAAGAAAGCTGCTCTACAGCAGAAGGAGAACCTTCCTCTGCCTCCAGACGGCCAGGCGCCCCCGCAGACGCCAGGGTCTCGTGTAGCAGCGGTCGGCCCTTATATCCAGTCCTCCACGATGCCCAGAGGCCCCGACAGACAAGACCTGCCCATCAAACACAATTACCCAGAATTCACAGCAACAGCAGGGCATCAGGACAGGAGCGCTCAGCCTGGAGCAGGTTTGCACTCAGGAAAAGCATCCTCGAAGTTGGCGAACTGGAGTTTGGCGAATGCGAAATCCGGCAATAATCACGTGACGTCCAGCCTGCCGCGCATGGTGAGCCAGGCATCGAAGAGCCAAGATAACACAGACGTGCAGAAACGAGACCCGCGGGTGCGTCCCGTCTCCATGTTTGAGTCCACTGATCTGCCTGCAGCCGCTCTGAGGAAAAACCAGAGCAGTGAAGACCTGGTGAGAGACGCACAGAGCGCTGTGAAGACCATAGTCAAGGTTCCACCTCCAGTTCCATCTAAACCTAAACAGGCCAACTTTCCGTCAGGAGGGCTGATGGGATTGGGGAAGAACACCGGCACCTACCCCGGGAAGAGTGCATCCCCGCAGCCGCCGGCCGGCCCCCAGACTGGTACTCTACCCTCCAAACTGGAGGCTCCACCAGCGGCCACGGTGCACCCGTTCAGCCCCGATCCCCCTGGAGCCAAAGACACAGGCGGGCAGATGCTGCTGAAGCCGCAGACTGTGACCGCCAGCTCCATCTACTCCATGTACACACAGCAGCCCAGCAGCGGGAAAGCAACGCAGCAGAGCATTCAGGGTGCGCTGAGTCGAGCACAGACCCGCACCGGACACTTCATCAGCGTTTACGGTAAGCCAGTGACGTCCGCAGGCCAGCCGTCTCAAACCCCACACCCTGAGAACCCATACTTGGACCCCCCCAGTGTCTCCGAAACCCTTACCGACCACAGTCCTGCAGAGCCCATTTCAGAAACCCCAGAAACAGAGCGCATTCCCAGACCCCTCAGTCCCACCAAACTGCTGCCCTTCATCTCGAACCCTTACCGCCACCAGAGTGACCTGGACCTGGAGGCGCTTCGGAAGAAACTCTACAACGCCCCACGGCCCCTTAAGAAACGCAGCTCCATCACAGAGCCTGAGGGCCCAGGCGGCCCCAACATCCAGAAACTGTTGTATCAGAAGACCACTCTGGCGGCGATGGAGACGGTAAGTCCTCCTGGAGAGGAGGAGAAGGAGACGCTAGCGAAACCGCAGGGATACGATGCAGAAACCCCAGAAGTGCCTGAAGAAACACTTCCCGAATTTCCAATCGCTCCTGAAGTGGAAGCAGAAGACGTTCCTCCGCCGCCACCTCCTCATCCGGCCCCGAAAATTGACGCATCCATTATCATCCCACCGCCACAGCCGGAGAGCCCTCCACCTCCACCTCCTCCTGACAGCTTCATGGAGGATTTCCCGCCGTATCCTCCACCTCCGTATCCAAGCAGTGCCGAGCAGGACAATCCAGACGACACCTTCAACATGAAGCCACCAGAGGTCACAGGACAGGTTCCCTTCCCACCTGGCAAGAGGACAAACCTGCGTAAATCTGGATCCGAGCGCATCGATCACAGCATGCGGGTGCGCTTCAATCCTCTGGCTCTCTTACTGGACTCGTCGCTGGAGGGAGAGTTTGACCTGGTGCAGAGGGTCATATATGAGGTTGAGGATCCGAGTCAGCCGAATGACGAGGGCATCACTGCGCTCCATAATGCAGTGTGTGCGGGTCACACAGAGATCGTCAAATTCCTGGTTCAGTATGGAGTCAACGTGAACGCAGCCGACAGTGACGGATGgactcCTCTGCACTGCGCCGCGTCCTGTAATAATGTGCAGGTGTGTAAGTTCCTGGTGGAGTCTGGAGCGGCCGTGTTCGCCATGACCTACAGCGACATGCAGACGGCAGCCGATAAGTGTGAGGAGATGGAGGAGGGATACACTCAGTGCTCGCAGTTCCTCTACGGTGTGCAGGAGAAGATGGGCATCATGAACCGTGGTGTGGTGTACGGGCTGTGGGACTACGAGGCGGCGCAGGAGGACGAGTGCTCCTTCCGAGAGGGTGACTGCATGAGTGTGATCCGCCGAGAGGACGAGCTGGAGACTGACTGGTGGTGGGTGCGCTGCGGCGGTGCGGAGGGATACGTGCCCAGAAACCTGCTCGGGCTGTATCCCAGAATTAAACTTCGCCAACGGAGTCTGGCttaagtgaacacacacacacacacacacacattacacacacacacacattacacacacacattacacacacacaacaagcaGCTGGTCAACTCCACTAGTTAATGACGCCTGTTTTTATATCTGATGTTACAGTGTTGTTTTTCTGTCTcttttttaacccttgtgtgctgttcagATTGACTCCTCTTTGGTGATGTTGTTGCTGcttttgctccattgacttccattataatcacatgtaTTGACTGTAAAGCCATGATAGCAGATCATCATTAAGTCATGAAGTGATTCTCAGTTTAATTGATGGTACATTTAACacaaaaacattcttgaaaaaaagTGAAACTTTTCTTTCATAACTGAAATAAATGCGAGATTTGGGAGGAGAATAAGGCTGTGAGTATCGAGAGGTCATAGTGCATTATGATCATGAGCCCCTCAATGCAAACTAATCTCCCTGTCATCTCTTTTCACCCTTTATACATAGTCTGCCGTAAATATTTGGTTGGAACACAGCGTTATGTTTAAACTGAGTTCAGTGttgcaacacaaaaatatttagtagtgtGCAAGTtgtccctttaagtcacaactaggTTATGTTTTAACTTACACACTGCTGGTGCAACCGGCCTGAACTCCATATAACAGACAGAAACTTTTCAGCACAGGCCGATCTAAAGAGTTAATGCtgacaactgatgatcaacagtataaATGACACACTGCCCCTCTAAATCCCAACAGGGGAAACCAGAATGCTTGATGATCTGCTGTCATGGTTTTGCagtcaataaatgtgattataatggaagtcaaaaacagcagcaacatcaccaaaggggagtcaatctGAACTGTGTGATGATGAGCTTTTGAACAATGtcaacacattttccttaaatatgCATCAAATTGAGATTTATCTCCATAAATCATCTCATTTGCTGAAACAGGGAAAACTGGGGCCAAGCTAagcctcaaaatcagcccagagtggatgaaaacgaccCACCAGCACACACAGGGTTAAAGTGTCTGAATATACGTGACTAGCTCGAGTAGAATGTGCTTTACTTTTGACTTTCGCTCAAGCATGTGCTGGTCATTTTACATCATGTTACACGATGCTTTAAAGACATTTATCATCAGAGAAAGATCAATGTTTTGATATGTTTGTCCTCTTATGAACAATGTTTTATACACGATGCTGGAAAACTGGCCTTAATACGCTGCATTTCTGGACCAATAGCGATCAACCGCTGAGACTTTGATTATGAGAGTGATGTTCTCAGATTTACTAAGACATTCCTTTATTAAATGCTGTGTTTGTGTATTCGTCTTCTAAATGATCTGACCAATCGGCAGCAGGAGGAGTGTCACATgatcaaacaataataaaaacactgtGAAATCG

Function

symbol description
tp53bp2a Predicted to enable p53 binding activity. Acts upstream of or within chordate embryonic development and negative regulation of protein kinase B signaling. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human TP53BP2 (tumor protein p53 binding protein 2).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0051898 negative regulation of protein kinase B signaling biological_process
GO:0005634 nucleus cellular_component
GO:0002039 p53 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040516-8 Predicted to enable p53 binding activity. Acts upstream of or within chordate embryonic development and negative regulation of protein kinase B signaling. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human TP53BP2 (tumor protein p53 binding protein 2).

Ensembl:

ensembl_id ENSDARG00000009136

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011280 True 4869 mRNA 0.52 18 646700 664472

Neighbor

gene id symbol gene type direction distance location
XLOC_005675 NA coding upstream 85715 553591 ~ 560985 (+)
XLOC_005674 wu:fc17b08 coding upstream 101047 534453 ~ 545653 (+)
XLOC_005673 degs1 coding upstream 131857 502230 ~ 514843 (+)
XLOC_005672 fbxo28 coding upstream 156131 482911 ~ 490569 (+)
XLOC_005670 CABZ01061569.1 coding upstream 208238 438347 ~ 438462 (+)
XLOC_005677 CU462915.1 coding downstream 4705 669177 ~ 670746 (+)
XLOC_005678 cutc coding downstream 9879 674351 ~ 678456 (+)
XLOC_005679 abcc2 coding downstream 17156 681628 ~ 711576 (+)
XLOC_005680 cox15 coding downstream 49469 713941 ~ 724385 (+)
XLOC_005681 nrxn1b coding downstream 68555 733027 ~ 811276 (+)
XLOC_005661 NA non-coding upstream 377383 268042 ~ 269317 (+)
XLOC_005659 NA non-coding upstream 404081 242088 ~ 242619 (+)
XLOC_005656 NA non-coding upstream 436968 202760 ~ 209732 (+)
XLOC_005685 NA non-coding downstream 194585 859057 ~ 861896 (+)
XLOC_005687 NA non-coding downstream 308537 973009 ~ 986263 (+)
XLOC_005701 CABZ01044297.1 non-coding downstream 1101035 1765507 ~ 1765622 (+)
XLOC_005705 NA non-coding downstream 1318839 1983311 ~ 2033043 (+)
XLOC_005706 NA non-coding downstream 1485298 2149770 ~ 2153016 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_06901329_06921880 TP53BP2 coding CI01000005 null 6901329 ~ 6921884 (+)