CI01000005_06901329_06921880 (TP53BP2)


Basic Information

Item Value
gene id CI01000005_06901329_06921880
gene name TP53BP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6901329 ~ 6921884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_06901329_06921880.mRNA
ACATATGCTATTGTAAGAGAGTCAACATGCAAATTAGAGGCTGAACCCAGTTGCCGGATCTTTATTGACATTAGTTGTGAACAGATGTTCCTGACTGTGTATCTCAGCAACAATGACCAGCACTTCACCGAGGTGCCCATCACCCCTGAGACGGTGTGTCGTGATGTGGTCGATCTGTGCAGAGACCCCGGCGACAGCAGCTGTCATCTGGCTGAAGTGTGGCGAGGCTCCGAGCGGGCAGTAGGCGAGAGCGAGAAGATGATGGATCTGTTGCTGCAGTGGGGACAGGCGAGGCCTGAGGTCCGGTTCTTTCTGCGTCACGGCAGAGCGCCCGGCCAACTGTCAGACTCCAGGACTTTGAATCAGAAGAGGAACGGCGTGAAGAAACCCGCTGACAGACGGCCGGAGAACGGGGTAAGCAGCCCGTGGATGGACATGACCCTAGCAGAGCTGCAGGAGATGGCGGCCAGACAACAGCGACAGATCGACGGCCAGCAACAACTCCTGGCCTCTAAGTCAGGGTTCCCACGCTTCCTGAAAGTACTTGAAATTCAGACACATGGATTCAAGGACTGGAAAGAGCAGCGTCTGCTCTTCCTGAAGCAGCAGGAGCACAGGCAGCAGCAGACCACTTCAGAGCAGAAGAAGCTCCAGCATCTGAGGGACGCGGTGGAGAAACAGGAGGCACAGCTGAAGATGGTCCGAGCTCTGAAGGGTCAGGTGGAACAGAAACGCCTCAGCAATGGAAAACTTGTTGAACAGGTTGAGCAGATGAACAGTCTACTCCATCAGAAGCAGAAAGAGCTGGTTGTAGCCGTGTCTAAAGTGGAGGAACTGAGCAAACAGCTGGAGACCCTTAAGAACGGACAGCTGGATGCGCTTCACAGTAACCAGAGCTCTGTGGCTGATTTGGACAGACTCTACAGGGAACTGCAGATGAGGAAAAACATCAACCTGGAGCAAAACACGAAACTACAGCAGCAGAGAGAAAACTTGAACAAGAGGAACCAAGAGGTGGCCAACATGGACAAACGAGTGAACGAACTGAGAGATCGCTTGTGGAAGAAGAAAGCTGCCCTACAGCAGAAAGAGAACCTTCCTTTGCCTTCAGATGGGCAGACGGCGCAGCAGACAGGAGTGTCCCGTGTGGCTGCTGTCGGCCCTTATATCCAGTCTTCCACGATGCCCAGGGGCCCCAGTAAACAAGACCTGCTTATTAAAAACACTTACCCCGACGGCACAGCAACGGTACCGCATCAGGAGAAGAGCGCTCGACCCGGATCAGATAAAGCAGACGTGCTGAAACGGGACCCCAGGGTGCGCCCCGCCTCCATGTTTGAGTCCATTGAACCGCCTGCAGCTTCTTTACGGAAGAATCAGAGCAGCGAAGACCTTGCGAGAGACATCCAGAATGCCATCAAGAACACCGTCAAGGTTCCTCCTCCAGTTCCGACTAAACCTAAACAGGCCAACCTGCCCTCCGGTGGCCAGATGGGATATGGCAAGACGGCCGTCAATGCCGGTACCTTCCCAGGGAAGAGTAAATCTTCCGCTCAGCAGCCGCCCACTGGCTCCCAGTCTGCTTTATCACAGGGAGGTACTTTACCCCTTCCCTCCAAGCTAGAGGCTCCTCCAGCGGCCACCGTACACCCCTTCAGCCTGGATCCTCCTGGAACCAAAGACTCCGGTGGGCAAATCCTGCACAAGCCGCAGATGCTGACCACCAGCTCCATCTACTCCATGTACACACAGCAGCCCGCGGCTGGCAAAGCGCAGCAGCAGAGCGCGCAGGGAGCGCTGGGCCGAGCCCAGACCCGCAGCAGCAACTTCATCAGTGGCCAGCAGTCTCAAAGCCAGTACCCTGAGAACCCGTACCTGGACCCGCCCAGTGGCCCGGAAATAGAGCGGGACCACAGTCCTGCTCCAGAAACCCAGGAGACAGAGCGTATTCCCAGACCTCTCAGTCCCACCAAACTGCTGCCCTTCATCTCAAACCCCTACCGCCACCAGAGCGACGTGGACCTGGAGGCTCTCCGGAAGAAGCTCTACAACGCGCCCAGACCCCTCAAGAAACGCAGCTCCATCACGGAGCCCGAGGGCCCCGGGGGCCCCAACATTCAAAAGCTCCTCTACCAGAAGACCACTCTCGCCGCGATGGAGACCACAGTGAGTCCTGCTGGAGAAGAGGAGAAGGAGATGGTGGCAGAAGCTCCCAAAGCTGATGAAGCGGCACTCGAGGGACCTGATCAAACTCTTCCTGAGCCACTGGCATCCACAGAAACAGAAGCGGAGGACGTCCCTCCTCCACCGCCTCCACACCCGGCCCCACAGCCCGACACTGAATTCTTACTTCCACCTCCTCAGCCGGCCAGCCCTCCTCCTCCTCCACCTCCTCCCGCTGAGAGCTTCGTAGAGGACTTCCCTCCATATCCTCCACCTCCTTATCCCAGTGGAGCGGAGCAGGAGCCTCCTGAAGACACATTTAACATGAAGCCACCAGAGGTCACCGGACAGGTTCCCTTTCCACCCGGTAAGAGGACGAACCTGCGTAAGGCCGGATCGGAGCGCATCGAGCACGGCATGAGAGTGCGCTTCAATCCTCTGGCTCTGTTACTGGACTCGTCTCTGGAGGGAGAGTTCGATCTGGTGGAGGATCCGAGTCAGCCAAACGATGAGGGCATCACTGCGCTCCATAATGCGGTGTGTGCTGGTCACACGGAGATTGTTAAATTCCTGGTGCAGTACGGAGTCAATGTCAACGCGGCTGACAGTGACGGATGGACACCCCTGCACTGTGCAGCGTCCTGTAATAACGTGCAGGTGTGCAAGTTCCTGGTGGAGTCTGGGGCGGCCGTGTTCGCCATGACCTACAGCGACATGCAGACGGCAGCTGATAAGTGTGAGGAGATGGAGGAAGGCTACACACAGTGCTCTCAGTTCCTCTACGGCGTCCAGGAGAAGATGGGCATCATGAACAGAGGGGTGGTGTATGGTCTGTGGGACTATGAAAGTGAGCAGGACGACGAGCTGTCGTTCAGAGAGGGCGACAGCATGTCTGTGATTCACAGGGAGGACGAGGACGAGACGGAGTGGTGGTGGGTGCGCATGGGAAACATAGAGGGGTACATACCCAGAAACCTGCTGGGGTTGTATCCGAGAATCAAACCTCGCCAAAGGAGTCTGGCTTAAATGA

Function

symbol description
tp53bp2 Enables NF-kappaB binding activity; identical protein binding activity; and p53 binding activity. Involved in intrinsic apoptotic signaling pathway by p53 class mediator and positive regulation of execution phase of apoptosis. Located in cell junction; cytosol; and nucleus. Colocalizes with perinuclear region of cytoplasm.

GO: NA

KEGG:

id description
K16823 TP53BP2, ASPP2; apoptosis-stimulating of p53 protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_06901329_06921880.mRNA True 3193 mRNA 0.57 18 6901329 6921884

Neighbor

gene id symbol gene type direction distance location
CI01000005_06809700_06812138 NA coding upstream 88879 6809700 ~ 6812450 (+)
CI01000005_06805919_06809589 NA coding upstream 91740 6805580 ~ 6809589 (+)
CI01000005_06707248_06710543 NA coding upstream 190486 6707248 ~ 6710843 (+)
CI01000005_06706460_06706909 NA coding upstream 194420 6706460 ~ 6706909 (+)
CI01000005_06693330_06699068 DEGS1 coding upstream 202074 6692275 ~ 6699255 (+)
CI01000005_06927239_06932095 NA coding downstream 5355 6927239 ~ 6932195 (+)
CI01000005_06954470_06955113 NA coding downstream 32586 6954470 ~ 6955248 (+)
CI01000005_06963000_06963933 NA coding downstream 40566 6962450 ~ 6964664 (+)
CI01000005_06965750_06987383 HEATR5B coding downstream 43866 6965750 ~ 6987619 (+)
CI01000005_06988616_06989546 HEATR5B coding downstream 66732 6988616 ~ 6989546 (+)
G39865 NA non-coding upstream 140246 6760778 ~ 6761083 (+)
G39864 NA non-coding upstream 147287 6753809 ~ 6754042 (+)
G39838 NA non-coding upstream 234384 6666742 ~ 6666945 (+)
G39835 NA non-coding upstream 241375 6656535 ~ 6659954 (+)
G39792 NA non-coding upstream 273088 6627891 ~ 6628241 (+)
G39906 NA non-coding downstream 16639 6938523 ~ 6938754 (+)
G39943 NA non-coding downstream 103133 7025017 ~ 7027390 (+)
G40005 NA non-coding downstream 222991 7144875 ~ 7145896 (+)
G40035 NA non-coding downstream 311913 7233797 ~ 7234020 (+)
G40039 NA non-coding downstream 317164 7239048 ~ 7239267 (+)
CI01000005_04735429_04736817 COX20 other upstream 2164472 4735346 ~ 4737082 (+)
G37392 NA other upstream 3177826 3722744 ~ 3723503 (+)
G36291 NA other upstream 5240297 1659733 ~ 1661032 (+)
G36223 NA other upstream 5363525 1503143 ~ 1537804 (+)
G35533 NA other upstream 6377548 491908 ~ 523781 (+)
G39930 NA other downstream 75660 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 676105 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005676 tp53bp2a coding NC_007124.7 CM002897.2 646700 ~ 664472 (+)
bowfin (Amia calva) AMCG00001561 tp53bp2 coding CM030143.1 CM030143.1 7729606 ~ 7752542 (-)