G37392


Basic Information

Item Value
gene id G37392
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3722744 ~ 3723503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU42433
TACAGCGGTTTAACAGGACAGGTTCCACTCAGAACAGGCCTCGCCATGGTCGACCAAATAAGTTTAGTGCACGTGCTCAGTGTCATATCCAGAGGTTGTGTTTGGGAAATAGACGTATGAGTTCTGCCAGCATTGCTGCAGAGGTTGAAGGGGTGGGGGGTCAGCCTGTCAGTGCTCAGACCATACGCCGCACACTGCATCAAATTGGTCTGCATGGCTGTCGTCCCAGAAGGAAGCCTCTTCTAAAGATGATGCACAAGAAAGCCTGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACATGGATTACTGGAACCATGTCCTGTGGTCTGATGAGACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCATGTGTGGCGGCAACTAGGTGAGGAGTACAAAGACAAGTGTGTCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAACCATGAATGCCAACATGTACTGTGACATACTGAAGCAGAGCATGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU42433 True 556 TUCP 0.50 2 3722744 3723503

Neighbor

gene id symbol gene type direction distance location
CI01000005_03600059_03605667 NA coding upstream 116769 3599574 ~ 3605975 (+)
CI01000005_03521422_03522147 NA coding upstream 200368 3519224 ~ 3522376 (+)
CI01000005_03447497_03448897 NA coding upstream 272761 3447187 ~ 3449983 (+)
CI01000005_03423676_03430312 NCOA4 coding upstream 292263 3423676 ~ 3430481 (+)
CI01000005_03317813_03368502 TJAP1 coding upstream 353360 3316294 ~ 3369384 (+)
CI01000005_03782413_03784445 NA coding downstream 58910 3782413 ~ 3784819 (+)
CI01000005_03804929_03868048 NA coding downstream 81382 3804885 ~ 3868281 (+)
CI01000005_03886705_03918267 NA coding downstream 160862 3884365 ~ 3918454 (+)
CI01000005_03924325_03937249 NA coding downstream 200822 3924325 ~ 3937423 (+)
CI01000005_03944039_03979362 UBR2 coding downstream 220536 3944039 ~ 3979659 (+)
G37344 NA non-coding upstream 117774 3604755 ~ 3604970 (+)
G37343 NA non-coding upstream 119766 3602747 ~ 3602978 (+)
G37325 NA non-coding upstream 151472 3570177 ~ 3571272 (+)
G37010 NA non-coding upstream 179766 3482064 ~ 3542978 (+)
G37297 NA non-coding upstream 204295 3516442 ~ 3518449 (+)
G37363 NA non-coding downstream 196140 3919643 ~ 3920159 (+)
G37366 NA non-coding downstream 217234 3940737 ~ 3941309 (+)
G37439 NA non-coding downstream 293262 4016765 ~ 4017597 (+)
G37378 NA non-coding downstream 321617 4045120 ~ 4045640 (+)
G36291 NA other upstream 2061712 1659733 ~ 1661032 (+)
G36223 NA other upstream 2184940 1503143 ~ 1537804 (+)
G35533 NA other upstream 3198963 491908 ~ 523781 (+)
CI01000005_04735429_04736817 COX20 other downstream 1011843 4735346 ~ 4737082 (+)
G39930 NA other downstream 3274041 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 3874486 7600541 ~ 7602964 (+)

Expression


Co-expression Network