CI01000005_03944039_03979362 (UBR2)


Basic Information

Item Value
gene id CI01000005_03944039_03979362
gene name UBR2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3944039 ~ 3979659 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_03944039_03979362.mRNA
AAATGGCTACAGGTGAGCAACCTGCCCAAAGAAGTTTACCAGCACTTGGCCTGCTATGTCCCCAAGATCTACTGCCTGGGCCCCAACCTGAACCCCCAGAATGAGGAGCTGCTGGCTCAGCTGCTGCTTCAGGGCCCGCTGGAGTGGTACCTGTGTGGGGAAGAGCCGTCCGTGGGATTGGCCAAGCTGGAACAGAACAACCAGCCCTCACAGCTCTGTGGCCATGTGTTTAAAGTGGGAGAGCCAACGTATTCTTGCAGGGAGTGTGCGGCCGATCCAACCTGTGTGCTGTGTATGCAGTGCTTCTTAGGCAGCGTTCACAAAGAGCATCGCTACAGGGATCCGTTGGCTAATCTGTCTGCTGAGATGATCGCTCGCACGTATAATGTTTTCTCCATCATTCTCAAATATGCTGTGGACATGCTCACCTGGGACAAAGAAGACGAGCTACCTGAAGGCCTTGAGCCACCGGCCCGCGGAGACATGTACTACTGCATGCTGTTCAATGATGAGGTCCACACATACGAGCAGGTCATCTACACACTACAGAAAGCTGTGAACTGTACTCAGAAAGAGGCCGTCAGTTTCGCCACCACCGTGGACAGAGATGGCAGGAAGTCTGTTCGCTTTGGGGACTTTCAGTTTTGTGAGCAGGCCAAATCTGTTATTGTGAGGAACACGAGTCGTCAGACGAAACCTCTGCGGGTTCAGGTCATGCACTCCTCTGTGGTGGCTCATCAGTGTTTTGCGCTCAAAGCTCTCAACTGGCTCGGCCAAATCATCAGATCCTCAGTGTTTGCGCCTGCTTATGTGGTGCCTGCTGATGTGAATCAGTGCCTGAGTGTATTACTGTCGCCCAGCAGATGCTCTGAGGAGGATCCTGTGTCAGGAGCGAGAAATGTTTACCACCAGCTCTTTATGAGCAGCCTACTCATGGATCCAAAGTACAAGAAACTTTTTGCAATCCAGTTTGCGAGGAATTACCGGCGCCTCCAGACAGATTTTATGGAGGACGATCACGAGCGTGTAGTGTCAGTGACCTCTCTGTCAGTGCAGCTCTTCACCGCCCCCACTGTGAACTATGAGCGCTTGCAGAGTGACTACGTGAAAGATGACCACGACAGGGAGTTCTCAGTCACTGACCTTTCTGTGCAAATGTTCACCGTGCCTTCTCTGGCGCGGATGTTGATCACTGAAGAGAACCTGATGACCACCATCATCCGCACCTTCGTAGACCACCTCAGACACAGAGACCTGCAGGGCCGTTTTCAGTTTGAACGCTACACCGCACAACAGGCCTTCAAATTCCGCCGAGTCCAGAGCCTTATAGGAGACCTCAAGTATGTCCTGATAAGCCGTCCAACGGAGTGGGGCGACCAACTCAGGGAGAAGTATCTGGAGGGTTTTGATGCTTTCTTGGAGTTGCTAAAATGCATGCAGGGAATGGACCCAGTAGTGCGTCAGGTGGGGCAGCACATAGAGATGGAGCCAGAATGGGAGGCAGCATTCACCTTACAGATGAAGCTCACACATATCATCTCTATGATGCAGGAATGGTGTGCCAGTGATGAGCGAGTGCTGATCGAAGCCTATAAGAAGTGCCTGAGCGCGCTGACTCACTGCCACAGTGGTTTCACAGATGGGGAGCAGCCCATAACCCTCAGCATGTGCGGCCACTCTGTTGACACCATCCGCTACTGCGTCTCTCAGGAGAAAGTCAGCATACACCTGCCTGTGTCCCGGCTTTTAGCAGGTTTACATGCTCTGCTGAGCAAAACTGAGGTTGCCTATCGATTCCCTGAGCAGTTGCCCCTGAGTGAACTGAGTCCACCCATGTTGATCGAGCACCCGCTCCGCTGCCTTGTACTCTGTGCTCAGATTTATTATTATCACAACGTGAAGTGTAGAGTGGAGATGTTTGATAAAGACCTCATCATGCTTCAGGCTGGAGCTTCCATGATGGATCCAAACCACTTCCTGATGATCATGTTGAGCCGTTTTGAGCTCTATCATATCTTCAGCTCAGCAGACTGCAGAAAAAGATACGGCAGAGAGAACGCTAACAAGGATGTGGTTCAGCAGAATAACACACTAATTGAGGAGATGCTGCACCTGGTCATTATGATTGTGGGTGAGCGATACACTGCAGGTGTTGGTCAGGTGGAGAGCTCTGATGAGATAAGGCGAGAGATTGTTCACCAGCTATGCATTAGACCCATGGCCCACAGTGAGCTGGTCAAAGCACTGCCTGAGAATGAGAATAAGGAAACCGGCATGGAGAGGGTCATCGATGGTGTTGCTTTGTTTAAGAAGCCTGGTGTGACGGGTAGAGGACTTTATAAACTCAGGCCAGAGTGCGCCAAGATGTTCAACCTTTACTTCCACCATTACTCCAGAGCTGACCAGTCTAAGGCTGAAGAGGCTCAGAGAAAGATAAAGAGGCAAAATGGGGAAGATTCAGTTCTGCCTCCACCAGTTTTGCCTCGGTTCTGTCCGCTGTTTGCTAGTCTGGTAAACATGCTGCAGTGTGACGTGTTGCTGGGGATTCTGGGAGCTGTGCTGCAGTGGGCAATGGAGCCCAGCGGAGGACACTGGTCTGAGTCCATGCTTCAGAGGGTGCTGCATCTCATAGGCATGGGCCTGGTGGAGGAACAGCAGCATCTCATCAGCAGCGCAGAAGATAACGATACCAACTTCAACTTCACTCTTAAAATCTCCAGACCAGGTGAGGCTCCTGCGAACACTCCCAGTATCTTGGCTTTATTGGAAACCCTGCAGAACGCTCCTCATCTGGAGGTGCACAAGGACATGATCCGCTGGATCCTCAAGACTGTGGCCACCATCAAGACCACGCGGGAGTGCACGGCCAGTGCGCCCCCTAGTGACAGCTCAGGGCACAGTCAAGAGGAGACGGTGCGGGACAAGGATAAGGCGGAGCGGAAGAGGAAAGCGGAGATGGCACGGCTCCGGCGGGAGAAGATCATGGCTCAGATGTCAGAGATGCAAAGACATTTCATCAATGAAAACAAAGAGTTGTTCCAGCAGAGCCTGGAGGAGCTCGATCCCTCCACCTCCTCCTCACTGGAGCACAGCCCCAGTTCGTGTGATAGCGTGCTGGTGTGTGTTGGTCCACGACGGTGGCGTGCAGGTGGCAATAAGTATGACCCTCTCTTCATGCACCCTGACCTGTCGTTCGGCACACACACAGGCAGCTGCGGACACATCATGCACTCTCACTGCTGGCAGCGGTACTTTGAAGCAGTGCAGGCTAAAGAGCAGCGCAGACAGCAGAGGCTACGTGTGCACACAAGTTACGATGTGGAGAACGGAGAGTTCTTGTGTCCACTCTGCGAATGTCTGAGTAACACAGTCATTCCACTGCTGCCTCTTACTAAGACCAGCTGCAGCTCTGAACAGCCTGATCTGAGCCAGTGGTTGAACATCACCTCTCAGCAGACGAAAGCCCTGCTCTCTGCTCACAGGAAGACCAAGGCCAACAGTGCTGCAGGTGCTGAAGGTGTTGATGATACAGATGGTGTTAATAACTGTCCTCCGCCTGATGGCTTCAAACTGGACCACACTCCAAACAACCCATACTCAAGCACCATAAAGGAGATGTTGACCACGTTTGGGACAGCCACATATAAAGTGGGTCTTAAAGTGCACCCCAATGAGCAGGATCCCCGCGTGCCAATCATGTGCTGGGGCAGCTGTGCCTACACCATTCAGTCCATAGAGAGATTGCTGGTGGATGAAGAAAAGCCTTTGTTTGGAAGTTTACCATGCAGACAGGACGACTGTTTGAGTTCTCTGACCCGGTTTGGCTCAGCCTGCTGGACAGCCTCCTCTCATACCACTGTGCAGAATCACTTTATCAGACTCTTAGCAGCCCTGGTTCCTGATCCCTGGGTGGAGAATACACCATGCATTCTGGATATAGACATGTTCCACTTGCTGGTGAGCTTGGTGCTGTCCTATCCAGCGATTCACTGTCTGGATTCCTCAGGGCTCAGCGAGGACACTGCACAACTGCACTTCCTGCACCTAGTCACTGTTGCTCACATAGTCCAGATCCTTCTAACCTCTGTACCAGAGGAGGTGCGGATGGAGCAGGAGAGTGGAGGAGCAGAGAGGGAGGAGGAAGAGAGAGTGTGTATGCTCTACAACACACTCAGGACACATCTGGGCAGTGGCTTGCGTGAGGTGAGCTCAGGCTGGCATCTGTGGCACTGTGTGAAAGCTGGAATCCTGCCTTATCTCAGGGCAGCCGCTCTGTTCTTCCACCATCTTAACGGAGCTCCAGCACCACCTGAGTTACACGCTGTAGGTGTGGGTGAATGGGAGACTCTGTGTGCATACCTGTGGATGCCTTCCAACCTGTTACAGCTCTACTACAACAATCAGGAGCTGATGGAAACTCTGCTGCAGGGATGGTGCTCTCACCCAGGTGTGCTGCAGGGTTTTCAGAGCAGCGTGGCTCTCATCAGGTTTCCCAGAGAGTCCAATCATCTCATAGAGCTGCCGTGTGACTACAGTGCTCTGATTAACCAGGCCTCCAGCTTCACGTGTCCTAAATCTGGAGGGGATAAGTCTCGCGCTCCTACTCTGTGTCTGGTGTGTGGTGCCATGCTGTGCTCTCAGAGCTACTGCTGTCAGACCGAGCTGGAAGGAGAGGACGTGGGCGCGTGCACCGCACACACTTTCGCCTGTGGAGCCGGAGTTGGCATCTTCCTCAGGGTGCGGGAAAGTCAGGTCCTGTTCCTGGCTGGCAAAACTAAGGGCTGTTTTTATGCTCCCCCATACCTGGACGACTATGGGGAAACAGACCAAGGGCTAAGACGGGGAAACCCATTACACTTGTGCCAAGAGCGCTACAGAAAGATCCAGAAGCTGTGGCGCCAGCACAGCATCACAGAGGAGATCGGCCATGCCCAGGAGGCCAATCAGACTTTGGTGGGCATTGACTGGCAGCACCTGTGAAGTCATGTGATGCATTCTCACACTCTTAATGCATAAGGGGATCCGCACAGCAGGGCTAGAGGTTGCCAAGGCGTCAACAAGGCCTCTTCCTCCACCCCTTTCTTCTGACAATGGATGAATGCATGACTTTTGTTTTGTGGGGGGGGGGATGGGGTTTTCTCTCCCTTTTTCTTTTAAATATGATATAAATACATATTTAAAAAGACACATAGCCAAGGTATTGAACCTTAACAATAAGGGTTCCTTCGCAACACAGATATTCTTCATAGGAATGCTATTTAATTTCTTCAAGTAATA

Function

symbol description
ubr2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in chromatin silencing; histone H2A ubiquitination; and ubiquitin-dependent protein catabolic process via the N-end rule pathway. Predicted to act upstream of or within protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Is expressed in female organism. Orthologous to human UBR2 (ubiquitin protein ligase E3 component n-recognin 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10626 UBR2; E3 ubiquitin-protein ligase UBR2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_03944039_03979362.mRNA True 5277 mRNA 0.52 46 3944039 3979659

Neighbor

gene id symbol gene type direction distance location
CI01000005_03924325_03937249 NA coding upstream 6616 3924325 ~ 3937423 (+)
CI01000005_03886705_03918267 NA coding upstream 25603 3884365 ~ 3918454 (+)
CI01000005_03804929_03868048 NA coding upstream 75758 3804885 ~ 3868281 (+)
CI01000005_03782413_03784445 NA coding upstream 159220 3782413 ~ 3784819 (+)
CI01000005_03600059_03605667 NA coding upstream 338064 3599574 ~ 3605975 (+)
CI01000005_04009363_04009659 NA coding downstream 28467 4008126 ~ 4009791 (+)
CI01000005_04073488_04107874 PKDCCA coding downstream 93829 4073488 ~ 4107874 (+)
CI01000005_04265065_04289873 EML4 coding downstream 285406 4265065 ~ 4290210 (+)
CI01000005_04362067_04363788 NA coding downstream 382239 4361898 ~ 4363913 (+)
CI01000005_04442502_04442922 NA coding downstream 462596 4442255 ~ 4442969 (+)
G37366 NA non-coding upstream 2730 3940737 ~ 3941309 (+)
G37363 NA non-coding upstream 23880 3919643 ~ 3920159 (+)
G37344 NA non-coding upstream 339069 3604755 ~ 3604970 (+)
G37343 NA non-coding upstream 341061 3602747 ~ 3602978 (+)
G37439 NA non-coding downstream 37106 4016765 ~ 4017597 (+)
G37378 NA non-coding downstream 65461 4045120 ~ 4045640 (+)
G38219 NA non-coding downstream 67876 4047535 ~ 4047735 (+)
G38254 NA non-coding downstream 84837 4064496 ~ 4064764 (+)
G38293 NA non-coding downstream 175992 4155651 ~ 4155950 (+)
G37392 NA other upstream 220536 3722744 ~ 3723503 (+)
G36291 NA other upstream 2283007 1659733 ~ 1661032 (+)
G36223 NA other upstream 2406235 1503143 ~ 1537804 (+)
G35533 NA other upstream 3420258 491908 ~ 523781 (+)
CI01000005_04735429_04736817 COX20 other downstream 755687 4735346 ~ 4737082 (+)
G39930 NA other downstream 3017885 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 3618330 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001852 ubr2 coding CM030143.1 CM030143.1 17543752 ~ 17568195 (+)