CI01000005_04009363_04009659


Basic Information

Item Value
gene id CI01000005_04009363_04009659
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4008126 ~ 4009791 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_04009363_04009659.mRNA
TTTTAAATGTGGCAAGGAGAACTAGTGTGGATGTTCAGTTAATAACTGCTTAAAGCTGCAGTATGGAACTTTTGCCTCTCTATCGGCATCTTTGAAACATAAAATTGTTATTTTAAGAGTTTCTTTTTTACGTTGGTTGTGCTTCGGCACTGCTCCACTGCACAGGTTAATCTGTGATCACCACATGAGAGTGGATCTGTCATTGTACATCGACATGACAATAAGAAGTACTTCCTACAAGACATATCCGAAAAAGATGTCCATCTAAATAAGTAGCATATCTGCCGCTTTTCACATTACTGACGTTTAGATCCAATGACTGCTCAGTCAGATCAGATCACACATTGCAAATTAGCTAGCTATTGAGCACCTGAATGTAAAAAGCCATCTCAGTCTTCAGTCCCTACAGATCTCAGGTTGTTGCCACCTTTCAAAAGCCATGCAGTTATTTACTCTCGTTTTAGGCTCTGTCGTTTTCCCTTTTGACTGTAGGCTATCTACAGCTCGAGGTTTCCTGGTTTTGACAACAGGTGATTCCCCAGATGTCAGTGATGGTTGCCCTTTAGACATTTCTAGATTAAAAGCAGCCATCTAGATGACAAATTTAAATTCTAAGCAACTGCATTCTCAGCACATGCCGTACAGTAGCCGGGTCTTCTTTCTGTTTACTGACGTGATGTAACCAAGCAAAGACGAATGATCTCAAACTGACATTTCCCACAAAATCAGACCTGACAGCTCAAATTATAAGTCTTTTTTTTTTTGGAAGCTTACCATTGGGAATCGGTGTAAGGTAGGGAGACAGTTGTGAACACTGGTGTCTTATATAATTGATCAATAACTCATTTTTTGTTATTTTTTTTAACCAAAAACAAGTTACATACCAGGGTTCTAAATTAACAAATGCGGGTTAAAATTCATTTTGGCGGGTGTTAATAAAAACTTACTAGCCAGTTTGGCCGGTGATGCATGAGGCTCTGTTCTCGGTCATTTATCCCCCTGGCAGCACTTCCTACATTTCCCATGAACACTGTGCCGTAATGCTACGTGATGACGTTTCATACGCCCATTGGCTGCATGCAGTTTGCAGCGAAACCAGCGCGAGAAACCACGGAAACGAACGGAGCGTCCATCAGAAAACACAAGGAAGAAGAAAAACGAACAGAGCCAAAGCAGGGAGCGTAGACTGAAAGAGGAGGGAGTTAGCTAGTAAAGGAAAAAGTTAAGATTAAACTAAATGCGGCGGTGGTTGGGACAGATTTCTGGGGGCGAGAAGAGGAACGAGGCAGGGGATGAGGATATCGACAGAGAAACGAAGAAAAGAAAATTTTATGCCAAATGGCTGACGGGTCATGAATGGCTTGTGTTTGATCACGAAAATGTCGTCATGTTTTGTCAGGATTGCCGCATGTGCGTGAAAGAAAAAAACAAAACGAGCAATTTCGTGGTGGGAACTAATAATTTTAAAGTTGAGGCAGTAAAGGACCATGAGAGTTCCGATTCTGATGGCACCTCTGAAGAAGAAGAGCTCTGAAGACATGTGATTCAAATGATAGATAGATGAAATGTTTGCACTTTCTGTGCATATTTGTGCATACATACTTTCTGTACAACATTTTGTTGTATGCATTGTACTTTATATGTGTTTTTCATGCCAACAATGTTA

Function

NR:

description
PREDICTED: zinc finger protein ZFP69-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_04009363_04009659.mRNA True 1666 mRNA 0.41 1 4008126 4009791

Neighbor

gene id symbol gene type direction distance location
CI01000005_03944039_03979362 UBR2 coding upstream 28467 3944039 ~ 3979659 (+)
CI01000005_03924325_03937249 NA coding upstream 70703 3924325 ~ 3937423 (+)
CI01000005_03886705_03918267 NA coding upstream 89690 3884365 ~ 3918454 (+)
CI01000005_03804929_03868048 NA coding upstream 139845 3804885 ~ 3868281 (+)
CI01000005_03782413_03784445 NA coding upstream 223307 3782413 ~ 3784819 (+)
CI01000005_04073488_04107874 PKDCCA coding downstream 63697 4073488 ~ 4107874 (+)
CI01000005_04265065_04289873 EML4 coding downstream 255274 4265065 ~ 4290210 (+)
CI01000005_04362067_04363788 NA coding downstream 352107 4361898 ~ 4363913 (+)
CI01000005_04442502_04442922 NA coding downstream 432464 4442255 ~ 4442969 (+)
CI01000005_04591681_04600244 PLPP4 coding downstream 581890 4591681 ~ 4600291 (+)
G37366 NA non-coding upstream 66817 3940737 ~ 3941309 (+)
G37363 NA non-coding upstream 87967 3919643 ~ 3920159 (+)
G37344 NA non-coding upstream 403156 3604755 ~ 3604970 (+)
G37343 NA non-coding upstream 405148 3602747 ~ 3602978 (+)
G37439 NA non-coding downstream 6974 4016765 ~ 4017597 (+)
G37378 NA non-coding downstream 35329 4045120 ~ 4045640 (+)
G38219 NA non-coding downstream 37744 4047535 ~ 4047735 (+)
G38254 NA non-coding downstream 54705 4064496 ~ 4064764 (+)
G38293 NA non-coding downstream 145860 4155651 ~ 4155950 (+)
G37392 NA other upstream 284623 3722744 ~ 3723503 (+)
G36291 NA other upstream 2347094 1659733 ~ 1661032 (+)
G36223 NA other upstream 2470322 1503143 ~ 1537804 (+)
G35533 NA other upstream 3484345 491908 ~ 523781 (+)
CI01000005_04735429_04736817 COX20 other downstream 725555 4735346 ~ 4737082 (+)
G39930 NA other downstream 2987753 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 3588198 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G105995 NA non-coding NC_048566.1 CM023220.2 2474692 ~ 2475026 (-)
eurasian perch (Perca fluviatilis) G88856 NA non-coding NC_053119.1 CM020916.1 29718234 ~ 29718483 (-)
bowfin (Amia calva) AMCG00015173 NA misc CM030132.1 CM030132.1 3933916 ~ 3949420 (+)