CI01000005_04073488_04107874 (PKDCCA)


Basic Information

Item Value
gene id CI01000005_04073488_04107874
gene name PKDCCA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4073488 ~ 4107874 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_04073488_04107874.mRNA
ATGAAGCGGAGAAAGATGGTGGTAGCGGCGGGCTTCTGCCTCTCGTTCCTCATGGGCACGCTGATGAATTTATTGTTCATTCCGGGATTCGAGCACCACGGCGAGCGCGTGCATCGCTACCACCACGAGAAACAGCAGCAGCAGCAGCCCGACGCGGACGCTCCTGCCCGGCTTCAAGTCGACGACCTGACACCAGTCGAAACGGCCGTCGTCGGCCGACTACCGGAGCTCCAGCGGCAAATACGCGAGCGATTAGACGAGGTTCTGCGGTACCGGCAGAGACGCGCGCACTGGGTCGGCACCGGACCGCTGGAGCGCAGGCGGCTCATGGACCTGGAGCAGCGCGGCGATTGGGAATCATACAAAGGAATCGAGAAAAACAATAATTACGATCAGTCTCAACCGACTCCCGCTGTATCCATAGCAACAAAATCACATCGGGAGTTTACGCGCGAGTCGGTGCTCGGCTGCAGCAGTATTGATAACGTTACCAATGTCCAGTATCTGGGCTCGGGATACACAAAGGCGGTGTACAAGGCGACTTTGAACAGCACTTTCTCCGTCGCATTAAAATCAGTCGATTTTGGGGGTCACGACATGGAGAATTGTGTGAAGAAATACGCGTCGTCCACAGACTGTTACAAACTCGCATCCTTCAAAATTGTCAAGGAAATGACGCTGATGGAGAGACTGCAGCACCCTAATATTCTCAAGCTCTACGGCTACTGCTACCAGGACAGCAATGATATAAAGGACACGGTGACGGCCATCACGGAGCTGGGCAGCCCTCTGGAGATGATCCAGCTGCTGCAGACGCCCTGGGAGGAGAGATTCAGGATCTGTTTGAGTCTGATGAGGCTGCTGCATTATTTGGCCCACTCCCCGCTCGGGTCCGTCACCCTGCTGGACTTCAGGCCACGGCAGTTTGTGTTGGTGGGGGGAGTGTTGAAAGTGACCGACCTGGACGACGCCAGTGTTGAGGAGACGCCTTGCTCCCCGTCTTCTCCTTCAGACTGTCTCATGGAGTTCCCTGCCCGCAACTTCACCCTCCCCTGCCACAAGGGGCGCTGTCAGGGTATCAACGAAAAGAGAAACCTCTACAATGCTTACAGATTTTTCTTCACCTACTTGTTACCTCACAGTGCCCCCTCAGCATTGAGACCCCTTCTGGACAAAATCGTCAACTGTACAAGAGAGCTGATATGGGGCACCGACGAGACTCTGGTTCACCTCGAAAAAGTGCTGGATATCTACAGGAACGGACATTACCTCAAGAATAACACGCAGACACACAAAACAGAGTATAAACGTGTGTCAGATGCCTCAATAGCAGCAGAGAACTACCGCTGCTGGCCGTCCTATCAGCACGACGGATGCCTGCTGTCAGTCTTCAGCGTCCATGAAGCTGTTGACATGTGTGAGAGACACGCCCAATGCCGGGCCTTCGTCATGACCAATCAGAGCACGTGGACAGGTCATCAGCTTGTGCTCTTCAAAACCGGAGCATCCAGCTTGACCGCGGCTCCAGGTAAACTCTCATACGTACGGCTGGGAGCAGCTGAGAGC

Function

symbol description
pkdcca Predicted to enable ATP binding activity and non-membrane spanning protein tyrosine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; fin bud; margin; and pharyngeal arch 3-7. Orthologous to human PKDCC (protein kinase domain containing, cytoplasmic).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K17548 PKDCC; extracellular tyrosine-protein kinase PKDCC 

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_04073488_04107874.mRNA True 1566 mRNA 0.55 7 4073488 4107874

Neighbor

gene id symbol gene type direction distance location
CI01000005_04009363_04009659 NA coding upstream 63697 4008126 ~ 4009791 (+)
CI01000005_03944039_03979362 UBR2 coding upstream 93829 3944039 ~ 3979659 (+)
CI01000005_03924325_03937249 NA coding upstream 136065 3924325 ~ 3937423 (+)
CI01000005_03886705_03918267 NA coding upstream 155052 3884365 ~ 3918454 (+)
CI01000005_03804929_03868048 NA coding upstream 205207 3804885 ~ 3868281 (+)
CI01000005_04265065_04289873 EML4 coding downstream 157191 4265065 ~ 4290210 (+)
CI01000005_04362067_04363788 NA coding downstream 254024 4361898 ~ 4363913 (+)
CI01000005_04442502_04442922 NA coding downstream 334381 4442255 ~ 4442969 (+)
CI01000005_04591681_04600244 PLPP4 coding downstream 483807 4591681 ~ 4600291 (+)
CI01000005_04735429_04736817 COX20 coding downstream 627555 4735346 ~ 4737082 (+)
G38254 NA non-coding upstream 8724 4064496 ~ 4064764 (+)
G38219 NA non-coding upstream 25753 4047535 ~ 4047735 (+)
G37378 NA non-coding upstream 27848 4045120 ~ 4045640 (+)
G37439 NA non-coding upstream 55891 4016765 ~ 4017597 (+)
G37366 NA non-coding upstream 132179 3940737 ~ 3941309 (+)
G38293 NA non-coding downstream 47777 4155651 ~ 4155950 (+)
G38301 NA non-coding downstream 68973 4176847 ~ 4177119 (+)
G38302 NA non-coding downstream 71272 4179146 ~ 4179514 (+)
G38305 NA non-coding downstream 76947 4184821 ~ 4185037 (+)
G38308 NA non-coding downstream 80170 4188044 ~ 4188265 (+)
G37392 NA other upstream 349985 3722744 ~ 3723503 (+)
G36291 NA other upstream 2412456 1659733 ~ 1661032 (+)
G36223 NA other upstream 2535684 1503143 ~ 1537804 (+)
G35533 NA other upstream 3549707 491908 ~ 523781 (+)
G39930 NA other downstream 2889670 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 3490115 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001848 NA coding CM030143.1 CM030143.1 17690869 ~ 17694329 (+)