CI01000005_04735429_04736817 (COX20)


Basic Information

Item Value
gene id CI01000005_04735429_04736817
gene name COX20
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4735346 ~ 4737082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_04735429_04736817.mRNA
ATGACTGAGGATGGCGGTAAGAGTCAAGGCTCGAAGGTCCAGAGTATCCTTGATATCCAGAACACACCGTGTGCTCGGGAATCTATCCTACATGGAGCAGGTGGTTCACTGGTGGCAGGATTGGTGCACTTTTTGGCAACAAGTCGAGTAAAGAGGTCGTTTGATGTGGGTGTCGCAGGATTCATGCTCACAACGCTGGGCTCATGGTTCTACTGCAGATATAATAATGCCAAGCTGCGTGTTCAGCAGAGAATCATTCAGGACGGCATAAAGAATAAAGTCATGTATGAAGGCACAAGTTTAGATCCCACACGGAAAAAGACAGAGGATGAGTAGAAGTTCCTTGTCTGATGCCTTTAATGTGAATGCCACTTTATTTATTGCATAATCAAATATGTCAAATGTTTGTAATAAAAAATTATTTTTTAAATAAAACAAGTGCTTTTTATTTTCATTTTGAGAATATGTTGTAGGCAGACTGTCTCTGAAACGCAGAGAAACTAAGTCAAAGTACTATTTGTTAATTTGCAACAGCAAGCAGCACTTTTTTTGACAATGAAATATATTTTCACCGAGCTCTGATTTGAAGGAAAAATACAAA
>TU43730
TTTATCGGTGCAACACAAATGTATTTTTTTATATAACGCATATGAACTTGTTTTAATGGTTGTGTTGAAAATTCATCTTGAACATGACTGAGGATGGCGGTAAGAGTCAAGGCTCGAAGGTCCAGAGTATCCTTGATATCCAGAACACACCGTGTGCTCGGGAATCTATCCTACATGGAGCAGGTGGTTCACTGGTGGCAGGATTGGTGCACTTTTTGGCAACAAGTCGAGTAAAGAGGTCGTTTGATGTGGGTGTCGCAGGATTCATGCTCACAACGCTGGGCTCATGGTTCTACTGCAGATATAATAATGCCAAGCTGCGTGTTCAGCAGAGAATCATTCAGGACGGCATAAAGAATAAAGTCATGTATGAAGGCACAAGTTTAGATCCCACACGGAAAAAGACAGAGGATGAGTAGAAGTTCCTTGTCTGATGCCTTTAATGTGAATGCCACTTTA

Function

symbol description
cox20 Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX20 (cytochrome c oxidase assembly factor COX20).

NR:

description
Zgc:92598

GO:

id name namespace
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process

KEGG:

id description
K18184 COX20; cytochrome c oxidase assembly protein subunit 20

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_04735429_04736817.mRNA False 601 mRNA 0.39 4 4735429 4737082
TU43730 True 459 TUCP 0.43 4 4735346 4736857

Neighbor

gene id symbol gene type direction distance location
CI01000005_04591681_04600244 PLPP4 coding upstream 135138 4591681 ~ 4600291 (+)
CI01000005_04442502_04442922 NA coding upstream 292460 4442255 ~ 4442969 (+)
CI01000005_04362067_04363788 NA coding upstream 371516 4361898 ~ 4363913 (+)
CI01000005_04265065_04289873 EML4 coding upstream 445219 4265065 ~ 4290210 (+)
CI01000005_04073488_04107874 PKDCCA coding upstream 627555 4073488 ~ 4107874 (+)
CI01000005_04809530_04815597 FBXO9 coding downstream 72448 4809530 ~ 4815911 (+)
CI01000005_04823360_04823708 NA coding downstream 86278 4823360 ~ 4824476 (+)
CI01000005_04846823_04854988 PERP coding downstream 109601 4846683 ~ 4856276 (+)
CI01000005_04864027_04864783 NA coding downstream 126432 4863514 ~ 4865034 (+)
CI01000005_04869756_04870223 NA coding downstream 132017 4869099 ~ 4871382 (+)
G38591 NA non-coding upstream 124493 4607941 ~ 4610936 (+)
G38580 NA non-coding upstream 153568 4576828 ~ 4581861 (+)
G38380 NA non-coding upstream 198251 4494473 ~ 4537178 (+)
G38382 NA non-coding upstream 207868 4497185 ~ 4527561 (+)
G38376 NA non-coding upstream 249979 4484358 ~ 4485450 (+)
G38629 NA non-coding downstream 22136 4759218 ~ 4762710 (+)
G38650 NA non-coding downstream 33975 4771057 ~ 4772499 (+)
G38616 NA non-coding downstream 48246 4785328 ~ 4790375 (+)
G38643 NA non-coding downstream 83707 4820789 ~ 4837117 (+)
G38676 NA non-coding downstream 115296 4852378 ~ 4854389 (+)
G37392 NA other upstream 1011926 3722744 ~ 3723503 (+)
G36291 NA other upstream 3074397 1659733 ~ 1661032 (+)
G36223 NA other upstream 3197625 1503143 ~ 1537804 (+)
G35533 NA other upstream 4211648 491908 ~ 523781 (+)
G39930 NA other downstream 2260462 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 2860907 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006367 cox20 coding NC_007124.7 CM002897.2 2515900 ~ 2520931 (-)