CI01000005_04809530_04815597 (FBXO9)


Basic Information

Item Value
gene id CI01000005_04809530_04815597
gene name FBXO9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4809530 ~ 4815911 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_04809530_04815597.mRNA
GCTGAAAGCAACCAAAATACTGATGGCACTGTTGAAGAAGGGGAAGATGAAAATACAGAGGATTCTAATATGCAAATGGAGCTCAGTGCTTTTCGGGCCAAGTGGATGTCTGAGCTTCAGCCCAGCTCAGGTGGAAAGAGAAGTCTCCAAAAAACTGCTGAACTGAGGAGGAAACAGGAAATAGCTAAAGAGGAAAAGGCCCGGGAGCTGTTCCTGAAGGCAGTCGAGGAAGAACAGAATGGAGCTGTTTATGAAGCCATCAAGTACTATAAGAGTGCGATGCAGCTGGTCCCGGACATTGAGTTTAGGATCAACTACAGCAGAACTCCTGATCCGGAACGGGGTGGGAGCTACTTGGAGGACAACGAGAAGGATCGGGAGATAGACGATCTACTGACGTACTTCCAACAGCATCTGATGCTGGAGGACGACACCATGAAGCTGTGTGAGCCTGAGACAGACACATCGCAGGTGCACATCTCAGCTCTGCCCCTTGAGGTGCTCATGTATATCTTCCGCTGGGTGGTGTCATGTGACCTGGACCTCCGAGCCTTAGAGCAGCTCTCCCTGGTTTGCAGGGGTTTCTACATCTGTGCAAGGGACCCTGAGATTTGGCGGTCTGCCTGTTTGAGAGTGTGGGGGCGGAGCTGCACCAAAATGCTGCCATTTTCATCCTGGAGAGAGATGTTTTTGGAGAGGCCACGTGTGCGCTTTGATGGTGTTTACATCAGTAAAACATCATACATTCGTCAGGGAGAGGAGTCTCTTGATGGCTTCTACAGGGCTTGGCACCAGGTGGAGTTCTACAGGTACCTGCGCTTCTTCCCTGACGGTCAGGCCATGATGTTGACCACCCCTGAGGAACCTTTGGTCATTGTCCCAAAGCTGCGCAGCAGGAACTCCAGGATGGATTCCATCATGTTTGGCCATTATCGGCTGTCCCAGGACACAGACAATCAAACCAAAGTTTATGTCATTGTCTCCAAGAGAAAAGAAGAGCAGAAGGTGGCAGAGTACCAGAGGAGCCGGTTCTGCAGGCGGAACCCCGTCCCTGAAGCCGAGCGCTCCTTCCATGTAGGACTGCAGTTGTCCTCTGGGAGGCGGCAGCGCTTCAACAAGCTGGTGTGGATCCACCATTCCTGCCACATCACCCACAGATCAACTGGAGAGACAGTTGTCACTGCATTCGATGTGGATAAAATGTACACGCCTCTGTTTTTTGCACGAGTGAAGAGCTACACAGCCTTTTCAGAGCGTCCGCTGTAGGACGACCCAAGCGATGCATGCAGAAATCCGACCCTCGACCCCTCCAGCCTCTCTACTGCTTCCAGCACAGGCTGTTTCTTATGAATGTACAAGAATGGTGTGACATTTTTAGAGTCCCTCAGTCTTAACTGCAGCGCAAAGCATTACGTTTTGTTTTCATTAGTGTAAGATCTGTTACTCTCTTATTGCAAAGATAAAGATACAATATATATAAGATTGTCTGTAAGAAGTTTCAGTTCAACTGTGATGAATGTTCACTTTGTTTGTGTGAAATTCAGTGAGGAAACATGTCTACTGACAACTGGAACACCCAA

Function

symbol description
fbxo9 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in several structures, including alar plate midbrain region; immature eye; musculature system; optic tectum; and pronephric duct. Orthologous to human FBXO9 (F-box protein 9).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10295 FBXO9; F-box protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_04809530_04815597.mRNA True 1580 mRNA 0.49 12 4809530 4815911

Neighbor

gene id symbol gene type direction distance location
CI01000005_04735429_04736817 COX20 coding upstream 72448 4735346 ~ 4737082 (+)
CI01000005_04591681_04600244 PLPP4 coding upstream 209239 4591681 ~ 4600291 (+)
CI01000005_04442502_04442922 NA coding upstream 366561 4442255 ~ 4442969 (+)
CI01000005_04362067_04363788 NA coding upstream 445617 4361898 ~ 4363913 (+)
CI01000005_04265065_04289873 EML4 coding upstream 519320 4265065 ~ 4290210 (+)
CI01000005_04823360_04823708 NA coding downstream 7449 4823360 ~ 4824476 (+)
CI01000005_04846823_04854988 PERP coding downstream 30772 4846683 ~ 4856276 (+)
CI01000005_04864027_04864783 NA coding downstream 47603 4863514 ~ 4865034 (+)
CI01000005_04869756_04870223 NA coding downstream 53188 4869099 ~ 4871382 (+)
CI01000005_05059810_05071818 NA coding downstream 243899 5059810 ~ 5071946 (+)
G38616 NA non-coding upstream 19155 4785328 ~ 4790375 (+)
G38650 NA non-coding upstream 37031 4771057 ~ 4772499 (+)
G38629 NA non-coding upstream 46820 4759218 ~ 4762710 (+)
G38591 NA non-coding upstream 198594 4607941 ~ 4610936 (+)
G38580 NA non-coding upstream 227669 4576828 ~ 4581861 (+)
G38643 NA non-coding downstream 4878 4820789 ~ 4837117 (+)
G38676 NA non-coding downstream 36467 4852378 ~ 4854389 (+)
G38699 NA non-coding downstream 80014 4895925 ~ 4896212 (+)
G38814 NA non-coding downstream 126049 4941960 ~ 4942159 (+)
G38818 NA non-coding downstream 132812 4948723 ~ 4949023 (+)
G37392 NA other upstream 1086027 3722744 ~ 3723503 (+)
G36291 NA other upstream 3148498 1659733 ~ 1661032 (+)
G36223 NA other upstream 3271726 1503143 ~ 1537804 (+)
G35533 NA other upstream 4285749 491908 ~ 523781 (+)
G39930 NA other downstream 2181633 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 2782078 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001752 fbx9,fbxo9 coding CM030143.1 CM030143.1 14526509 ~ 14533785 (-)