CI01000005_03924325_03937249


Basic Information

Item Value
gene id CI01000005_03924325_03937249
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 3924325 ~ 3937423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000005_03924325_03937249.mRNA
ATATCTCGGGCATGGAACGTGGATGTGATGCGTTTTTTCCTGGAAAGAGGGTCTGATTTCCAGAGGGCCGATGCCTTTGGAGTGACACCTCTTCATGTAGCTGCAGCTCTGGATTATGAGGAGATGCTGCAGTTCCTGTTAGAAAGAGGAGCGGACATTGAAGCTCGCACATATAAAGACAAACAGACCCCGCTGCACTTCGCTGCTAAGAATGATGCTGTCGGCGCAGTTAGGATGTTACTGCAGAACGGGGCGGACATCACTGTACGAGACTATAAAGAGAGGACGCCTCTACAGCTGGCTGCAAACTTCGATCGAAGTGAGACAGCACGTTTGCTGCTGGGGTTTGGAGCAGATGCTGGGGTGCAGGACTCTGACGGACAGCTCTGCATTACTGCTATGATTACTAAAATGAGCCCTGTGGCTGATCTGGCAATGAATCAGTTCCATATGAAAGACCGAATGGCCCGACAACAGTTCTACTACCTTCATCTAATGGAGCCAAAGCCGGATGACAAGACAAACCCGAAAGGTTCTGATCCGTCATCACCGCTGGAGTTTATTGTCAATCAGGGTAAACTGGATCTCATCATGCACCCTGTAGTGCTCAAACTCATCACTGTCAAATGGAACTTATATGGCAGAATGGGCGCCTGGATACTCCTGCTTTTCAACTTCCTATTTATCATCTCCTGGACAACAGTAGCCATATCTGTGTCAGTACGTCCAGATGGAGATCGGTACAATCTTCCTCAGGACTGGTGGCGTGTGCTGCTGGTGGTTCTGGCACTAGTGCTGACGGTGACCGAGGTGTACAGGGAAGTGATGGAGATTGTGCGATCTCGGAGGAAACTCAAGCGCTGGCAGCGCTGGACTGTGCAGAAACTCAATGAGGACTTGAGCTGCTCTCACCCCATGTGGCCTGAGGAACGCAATTATTTAGAAGGCCAAATTAAGTATATTCGAAACCTGAAAGGAACCTACACTCAAGACCCCTGGAATATCTTTGATTGGCTAGTGTATTTGCTGCTGCTGACCGTTCTGGGCATCCACTTGACAGATATATTACTAGTGTCTGACACACTTCGACAGAACAGTCTTCGCCTCTTCGCAGTGTCCATTATTTTCCTGTGGTTAAGGCTGATGAAGCATGTCCGAGCTTTTAGAGCTATGGGTCCCTTCATTGTCATGCTGGGGAAGATTGCAGGAGACGTGCTGCGATTCCTCTTCCTCTATATAGAGATCTACATTCCATATGCCTGTGCTTTCTGGATCATATTTGGAGGTATAGCTGAAGTGCCAAGTATGCAGACGGTTCCTGAGCTGCTGTACAGCCTCTACCGCATCACCCTGGTGGATGAGTATGAGTTTGATGCCATGCTGGATGTGGACGCAGTCATGGCCTACCTTCTCTGCGGAACATTTCTGGCCCTGTCTGCTATTCTCTGTGTTAATTTACTGATTGCTCTGCTTTCTGACACCTTCCAAAGGGTCTATGACAACGCACTGGCCAATGCGGTGATGCAACAAGCAGCTATCATTCTGCAGATAGAGGAATCCATGCCTTGTCTGAGACGTTGCTATGACAACGAGCACATCCACCGCCATTGCGCCCCGCTTGGAGAATTCTTTGATGATGATGTCACCACTAACCCAGATCAGCACGCTGAGATGAAGAAGCTTACGGAACAGATCAAGGATACTTTAGATAAATATCTGAACATCCAGAGAGAGGCAATCTCACCTCAGTTAGCCTATGCAGATGCCAGAGAAGTCACAAGACTTGGAAAAGACCAGGAGAAGCAGAGTCAGGACCTGAGTGAGCTGAAGGCTGAAGTGAAGGAACTCCACAGTTTGCTGCTCAATCTGATCCAGCCCAAGACAAACTCAACATCACCCACTGATAAGGACAAGACACACTCAGTGACAAAGCAACCTAAACCGGACAACAAAACCTCTGAAACTGATCAATGAAATACAGAAATCAACATTGAATCCACCAGGAGCAAGACTGGGAAAGGACTTCTGTGCAGCATGTCATACATGATTTTGTGACCTAGAATTGTTTTATTATTTTTTATGATTTTTTTTCTTAAGTTATGCATTGTACCAAGTTACCATAACAATATAGGTTTGCATCTGTGTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000005_03924325_03937249.mRNA True 2148 mRNA 0.47 15 3924325 3937423

Neighbor

gene id symbol gene type direction distance location
CI01000005_03886705_03918267 NA coding upstream 5889 3884365 ~ 3918454 (+)
CI01000005_03804929_03868048 NA coding upstream 56044 3804885 ~ 3868281 (+)
CI01000005_03782413_03784445 NA coding upstream 139506 3782413 ~ 3784819 (+)
CI01000005_03600059_03605667 NA coding upstream 318350 3599574 ~ 3605975 (+)
CI01000005_03521422_03522147 NA coding upstream 401949 3519224 ~ 3522376 (+)
CI01000005_03944039_03979362 UBR2 coding downstream 6616 3944039 ~ 3979659 (+)
CI01000005_04009363_04009659 NA coding downstream 70703 4008126 ~ 4009791 (+)
CI01000005_04073488_04107874 PKDCCA coding downstream 136065 4073488 ~ 4107874 (+)
CI01000005_04265065_04289873 EML4 coding downstream 327642 4265065 ~ 4290210 (+)
CI01000005_04362067_04363788 NA coding downstream 424475 4361898 ~ 4363913 (+)
G37363 NA non-coding upstream 4166 3919643 ~ 3920159 (+)
G37344 NA non-coding upstream 319355 3604755 ~ 3604970 (+)
G37343 NA non-coding upstream 321347 3602747 ~ 3602978 (+)
G37325 NA non-coding upstream 353053 3570177 ~ 3571272 (+)
G37366 NA non-coding downstream 3314 3940737 ~ 3941309 (+)
G37439 NA non-coding downstream 79342 4016765 ~ 4017597 (+)
G37378 NA non-coding downstream 107697 4045120 ~ 4045640 (+)
G38219 NA non-coding downstream 110112 4047535 ~ 4047735 (+)
G38254 NA non-coding downstream 127073 4064496 ~ 4064764 (+)
G37392 NA other upstream 200822 3722744 ~ 3723503 (+)
G36291 NA other upstream 2263293 1659733 ~ 1661032 (+)
G36223 NA other upstream 2386521 1503143 ~ 1537804 (+)
G35533 NA other upstream 3400544 491908 ~ 523781 (+)
CI01000005_04735429_04736817 COX20 other downstream 797923 4735346 ~ 4737082 (+)
G39930 NA other downstream 3060121 6997544 ~ 6998340 (+)
CI01000005_07600541_07600974 NA other downstream 3660566 7600541 ~ 7602964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006378 si:ch73-193i2.2 coding NC_007124.7 CM002897.2 3327417 ~ 3351708 (-)