AMCG00001561 (tp53bp2)


Basic Information

Item Value
gene id AMCG00001561
gene name tp53bp2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7729606 ~ 7752542 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001561
ATGTTCCTGACTGTATACCTCAGTAACAATGACCAGCATTTTACGGAGGTGCCCATCACCCCTGAGACTTCCTGTCGGGATGTGGTGGAGCTGTGCAAGGAACCAGGAGAGACCGAGTGTTACCTGGCTGAAATGTGCCGCGGCTCTGAGAGAGCCATTGGTGACGGGGAGCGGATGCTTGATGTTCTGCAGCGCTGGAGCCAGCAGAGGGCGGAAGTGCGTTTCTTCCTGCGGCACGAGAGAACGCCCAGCCGAGAGTCGGGTGGATCCCGGACTCAGGACCACATGTCCAAGAGGAATGGTGTGAAATTACCCACAGACCGGAGGGAAGAGAATGGGGTGGCAGTGCCTCGCATGGACATGACACTGGCGGAGCTGCAGGACATGGCCGcccggcagcagcagcagatcgacacccagcagcagctcctggcTTCCAAGGAGCAGCGGCTGCGTTACCTGAAGCAGCAGGACCAGCGTCAGCAGCAGGCCTCGGAGAAGGACAAGCTGCAGAGGCTGCGCGAGAACGCAGAGAACCAGGAGGCCAAGCTGAAGAAGGTGCGCGCTCTGAAGGGCCAGGTGGAGCAGAAGCGCCTCAGCAACGGAAAGCTCGTGGAAGAAATTGAGCAGATGAACAGTCTGTTCCAGCAGAAACAGAGGGAGCTGGTGTCGGCTGTGTCCAAAGTGGAGGAGCTGAACCGACAGCTGGAGATGCTGAAAAATGGCAAGATCGACAGTTTCCACGACAACCAGAGCTCCGTGGCAGAGCTGGACCGCCTGTACAAAGAGCTGCAGCTGAGGAACAAACTGAACCAGGAACAGAACAGCAAACTGCAGCAGCAAAGGGAGAGCTTGAACAAGCGTAACTCTGAGGTGGCGACCATGGACAAGCGAGTGAGCGAGCTGCGTGACCGGCTCTGGAAGAAGAAGGCGGCGCTGCAGCAGAAAGAGAACTTGCCTAATGGCTTTCCCACTAAAGACAAGGCTTCAAAAGACTCATCAATTCAGATTGTCCACGATGGCCACCCCTCGCAGCAGCCGGGCTCTGCTCAGAGCAGGGTGGCGGCAGTGGGCCCCTATATCCAGTCCTCCACCATGCCCCGTGGTAATGCGAGGCATGACCTGCTTGTGAAACCGGCGCACCCCGACGGCACGGCCACCCTGCCTATGCAAGACGGCCCCCTGAAAATCCAGGCCAGGATCGGAGGAGCGCCCCCGAACAAACCTCCCTCAGGGAGAAAACTGGCCAGGGCCTCCCCCCAGCCCTGGGCCGAGTCCAGCTGTGACGTGAGTTTGAGCACTGAAGAAGCGATGTTCTTACTAAAGCCACTAAAAGATCTGCGGGCAAAAAGAAAAGgGGTTGGACAGCAGTTACCCAAGAGCTCCCAGTCCCTTCCAGAGTGGAGTACAGAATCCAACGGCAACCACGGCTCGTCATCCACCCTGCCCAGGATGGGAACCCACAGGACTTCAGACCAGGAGGACAACGAGGtgctgaagagagagaaagacaagaaGGTCCGTCCCTTCTCCATGTTCGAGTCCAGCGAGCCCACCCCCGGCCCTCCCTCCACAGGGACGCTCCGCAAGAACCAGAGCAGCGAGGACCTGCTGAGGGACGCACAGAATGCTGCAAAGGCCCCAGTTAAGGTCCCCCCGCCTGTGCCCAGCAAGCCAAAACCAGTCAACCTGCCCTCTGGTGGTCTACATGGGCAGCCCGCCTACGGGAAGCTGCCTGGCACAGGGACATTCCCCGGCAAGACCAAACCGCCTAGCCAGCAGCAGCCCCCCAACACGCAGGCCTCCCAGCACAGACTCTCCATCCCCTCCTCGCAGAGCCACACCCTGCCCCTGCCCTCCAAGCAAGAGACACCCCCTGCTGCCACGGTGCGACCTTTCACCCCCGAGATCCCAGCCAAGGAGCAGGGCAACCAGCCCTTCCGGAAGCCGCAGACGTTGGCGGCCAGCTCCATCTACTCCATGTACACCCAGCAGCCCACGCCGGGCAAGAACTTCCAGCAGGCCGTGCAGAGTGCGCTGACCCGGGCGCAGACTCGCAGCAACCCCTTCGTCAGCGTGTATGGAAAGCCGGTCATCTCTGGAGCCGGCCCTGCGCCTTCCCAGCAGCAGTCTCATCCCCAGTATCCTGAAAACCCCTACCTTGACCGGCCCGGAGGCCCAGACGCGGAGGTTGAACATGTGGGGAGCTCACCTGCCGGGGAGACCCAGGAGGTGGAGAGGATCCCCCGGCCTCTGAGCCCCACCAAGCTACTGCCCTTTATCTCCAACCCCTACCGCAATCAGAATGACGTGGACCTGGAGGCCCTGCGCAAGAAACTCTACAACGCCCCCCGCCCTCTGAAGAAACGCAGCTCTATCACCGAGCCCGAGGGCCCCAGTGGCCCCAACATCCAGAAACTGCTCTACCAGAAGACCACGCTGGCTGCCATGgaaaccaccaccaccattgGTGCCCCCTTCTTTCAGCCCAAACCTGGCGCCGAAGAGGAGAGCGCCCCCCCTCAGAATGCCGAAGCGGCCCCTGCAGACGGGGAGGCACCCCAGCCTGCCGTTCTGCCCGCTGATGTCCCAGCGGCCCCTGAAGTGCCACCCAGCCCGGAACCTGTAGATCACGACTTcatccccccgcccccacctTCCCGTCCCCCGCCCATTCCCGAGAGGCTCCAGGACGCGCATAACGTCCCACCACCGCCCCCcatggaggaagaggaggagcccGGTCTGCCCCCACCACCAGAATCTTTCATGGAAGAGTATCCACCCTACCCACCCCCGCCCTACCCCATGGCTGGGGAGCAGGAGGGCCTGGGGGAGGACACATTCAGCATGCAGCCTCCAGAGATCACCGGACAGATCTCCCTGCCGCCGGGCAAGAGGACCAACCTGCGCAAGGTTGACTCAGAGCGGATAGACCATGGCATGAGGGTGAAGTTCAACCCACTGGCTCTCCTGCTCGACTCCTCCTTGGAAGGGGAGTTTGACCTGGTGCAGAGGATCATCTATGAGGTGGATGACCCCAGCCAGCCCAATGATGAGGGCATCACAGCCCTACACAATGCTGTCTGTGCAGGCCACACCGAGATTGTGAAGTTCCTGGTGCAGTTCGGGGTCAACGTCAACGCGGCGGACAGCGACGGCTGGACCCCCCTACACTGCGCCGCCTCCTGTAACAATGTGCAAGTGTGCAAGTTCCTTGTGGAGTCGGGAGCGGCCGTGTTTGCGATGACCTACAGCGACATGCAGACCGCAGCGGACAAGTGTGAGGAGATGGAGGAGGGTTACACGCAGTGCTCCCAGTTCCTCTACGGCGTCCAGGAGAAGATGGGCATCATGAACAGGGGGGTGGTGTACGGCCTGTGGGATTACCCGGCTGAAATGGACGATGAGCTTGACTTCAAGGAGGGCGACTGCATGACGATTATGCGGagggaggatgaggaggaaatCGAGTGGTGGTGGGCACGactgggagagaaggaggggtaCATCCCACGCAACCTTTTAGGGTTGTATCCAAGAATCAAGCCAAGACAGCGAAGCCTGGCTTAAATCGAGCGGATCTTGGCTGTTCTTCCACCGGCTCCTGTATATGCTCGCTCACCAGTGAACTGTAGCATTGTGACAGCTGTTACAAGATAGCACGCTCTCATAACTCTTTGGACAAACTCTCCTGGACAGAAGGAAACGAGTGTCCGAAATGAAGAAAACTAGTACATGAAGGAACACTTTCTCGTGAATATAAACACTACAAGGAAGACACTGACTTTGACTATGGTATAGTCTGGATCACGGTGTCGTCTGTAGAAGCTCCACTATGTTGATCTCAGAGGATTTTAAACAGAGGAGATATTTTTTCAGCAAATCAAAGACAGATGATTTATATGTATACTGTCTGTGTCTTATTGACAGATTAAATATTGTTActgattcatatattttgtatagaaTGAAGCATCAGCAGCACAGTACTGTTATACAGTAATTTGTAAATGAAACGAACAGTATTTTTGTGTAGGGTGTTGAGACATTCTTTTGAGTCTAAATGTAACTGGGGCAGCAGGACTGGGTGTGACTGGTTCCTGGGTGATTTCAAGGCTTTTCAGCAGAAATTCAGTGTATTTGCGtgtgtatgttttcatataataaatatatgaaaatgtacatgtatatataaatatacatacacacccaCCTTTTATAAATAAGCAgccttcacattttaaaatgtctggaaattttttatttcacaggctttgagaagaaaaaaacaaaaggcattttttttttccagggttGCTCATtttactatacacacacacacgcatatgtatgtgtgtgtgtgtgtatgtatgtatgtatatatatatatataatatgaatttCTGCCTACTGAAGTCTTCGTTTCAGTGAGTCAAGTGGAAACATGTATATCTACACTTTATATACTTATTCCTGCTGTGTTTAATGCACTAGCACTATAGGTTATTCCATTATGCATCCACAATTTTAATACCAGCACAAGtcgtttattgatttatgtgaaTATGTACCCAGATGGCAGAGGTTGCCTATGTTCAGTTAAAAGCATTACTTTTTGGATATAATATTGTGCTATacgtgtgcatgtgtctgtgacCTCCCCACACCACACTCTTCCAGTTGCAGTTAAATGGCAAGCCTATGGTTTTGAAATCTGGCTAACCTGTCCTTGTTGATATCCAGTCGGTATATGGCTGCACAGATATTAATGGTAATATTAACATGTTTGGTTTAAAATGGCTGGAGTCATTTAGGGAGAGACACAGatgcacaaaaatatatatttacatacacaatgcatttttcagatATGTAACCAAGAAGCTTTGTCCCAACTAAAGGCCCAGCCCTGTTCAGATTTGAGTGTGCAAGTACAAAGAAACAGGCCTTTGCTGTAAGTCCAGCTTTTTCCATTCCGGCTCACCTTCAGAGAGGCCCATCTCTGCCGTGAGGAGACAGGACAGGAGCACACGAGACAGCTCTGTGTGCAATGTGACTGCTGCGTTGGCAGGCGCTGTGGCTGCAGATGTCCCGTGATTATGAACGCTTTGCTCAGCTGCAGCTTCACGCTGGACTGAGTCCTCGGCGATGTATGTTGTGAGGGGGGGGCTGTAATTTCATTACTGCTTCCAAGCATGGAGTGTTTCAGACGCGTCTGCACTAGGGCTTCTCAGCGGAGGGACATCATCTGGTTCACAGCACACCCTGGAGTGAGTTTCAATCAGAAGAACAGCGGAGCCCCGATTCTCTTCAAATCTCACTCCACACTGAAGTTGTTATGCTGTGATAATTGCAGCATCCTGCGCCCTGATGCGTAGCTGCTCATTGTCATGGTTACCACCACTAAGGGATGCTCCACTGCACGGGGTAAGAGAGAGGACACTGCCTGCCTATATCACTGGCTCTTTTccacagatatttattttatgtttgtccttttttttatttggatgaTGCTATTGTCTAGAATGTATAACATCACTTGTAGAGTTTAAgaattttcaataaaatactttGCTTAAAAA

Function

symbol description
tp53bp2 Enables NF-kappaB binding activity; identical protein binding activity; and p53 binding activity. Involved in intrinsic apoptotic signaling pathway by p53 class mediator and positive regulation of execution phase of apoptosis. Located in cell junction; cytosol; and nucleus. Colocalizes with perinuclear region of cytoplasm.

NR:

description
PREDICTED: apoptosis-stimulating of p53 protein 2

GO: NA

KEGG:

id description
K16823 TP53BP2, ASPP2; apoptosis-stimulating of p53 protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001561 True 5588 mRNA 0.53 20 7729606 7752542

Neighbor

gene id symbol gene type direction distance location
AMCG00001566 polh,LOC102796828 coding downstream 1187 7727579 ~ 7728419 (-)
AMCG00001563 NA coding downstream 2303 7713750 ~ 7727303 (-)
AMCG00001562 NA coding downstream 36905 7691385 ~ 7692701 (-)
AMCG00001565 NA coding downstream 46008 7677677 ~ 7683598 (-)
AMCG00001564 NA coding downstream 55546 7666480 ~ 7674060 (-)
AMCG00001580 NA coding upstream 144224 7896766 ~ 7909395 (-)
AMCG00001581 polr3f,LOC107655353 coding upstream 165658 7918200 ~ 7921881 (-)
AMCG00001579 kat14,csrp2bp coding upstream 177203 7929745 ~ 7936448 (-)
AMCG00001578 NA coding upstream 184709 7937251 ~ 7939840 (-)
AMCG00001570 NA coding upstream 245463 7998005 ~ 8006541 (-)
G158635 NA non-coding downstream 49828 7647716 ~ 7679778 (-)
G158622 NA non-coding downstream 154478 7574910 ~ 7575128 (-)
G158620 NA non-coding downstream 172610 7551457 ~ 7556996 (-)
G158619 NA non-coding downstream 178382 7549744 ~ 7551224 (-)
G158582 NA non-coding downstream 415852 7312083 ~ 7313754 (-)
G158681 NA non-coding upstream 13087 7765629 ~ 7765866 (-)
G158701 NA non-coding upstream 91965 7844507 ~ 7859547 (-)
G158752 NA non-coding upstream 195806 7948348 ~ 7950960 (-)
G158767 NA non-coding upstream 243432 7995974 ~ 7996183 (-)
G158883 NA non-coding upstream 550008 8302550 ~ 8304511 (-)
AMCG00001554 NA other downstream 65034 7662091 ~ 7664572 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other downstream 952948 6772338 ~ 6776658 (-)
AMCG00001514 NA other downstream 1219902 6507875 ~ 6509704 (-)
AMCG00001491 NA other downstream 1847286 5880184 ~ 5882320 (-)
AMCG00001487 NA other downstream 1983281 5657962 ~ 5746325 (-)
AMCG00001557 NA other upstream 38839 7791381 ~ 7795966 (-)
AMCG00001594 NA other upstream 339786 8092328 ~ 8095726 (-)
AMCG00001583 ggps1,LOC107728322 other upstream 473027 8225569 ~ 8252204 (-)
G158971 map1lc3c,LOC107701141 other upstream 761825 8514367 ~ 8540258 (-)
AMCG00001615 NA other upstream 1321547 9074089 ~ 9103034 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_06901329_06921880 TP53BP2 coding CI01000005 null 6901329 ~ 6921884 (+)