AMCG00001566 (polh,LOC102796828)


Basic Information

Item Value
gene id AMCG00001566
gene name polh,LOC102796828
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7727579 ~ 7728419 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001566
ATGGATTATGGGAAGGATCGTGTGGTGGCGCTGGTGGACATGGACTGTTTCTACGTCCAGGTGGAGCAGAGACTGAACCCGCAGCTGAAGAACAAGCCCTGTGTGGTGGCCCAGTACAAGACCTGGAAGGGAGGCGGGATTATAGCTGTGAGTTATGAGGCCCGGGCGCATGGAGTCACCAGGAACATGTTTGCTGATGATGCCAAGAAGCTGTGTCCCGACCTGCAGGTGGCCCGGGTCCGAGAGTCTCATGGCAAAGCCGACTTGACCCTTTACCGGGAAGCCAGCGTGGAGGTGATTGAGGTGATGTCTCGGTTCGCCGTGGTCGAGAAGGCCAGTATCGACGAGGCGTATATGGACCTGACTGGTGCCGTGCAGCAGAGGCTGAGAGCGATGCCGGGGCGGCCGATGGAGCCGGGCCTGCTGAAGACCACCCACGTTCAGGGCTTCCCACAGCGGGtgcaggaggaggaggctgtGCTGGATAAAGGTCTGCTTCTAATCAGCGGCACCGACAAACCAGCAAAGCGCTAA

Function

symbol description
polh Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in error-prone translesion synthesis and response to radiation. Predicted to act upstream of or within DNA biosynthetic process and DNA repair. Predicted to be active in nucleus; replication fork; and site of double-strand break. Human ortholog(s) of this gene implicated in xeroderma pigmentosum variant type. Orthologous to human POLH (DNA polymerase eta).

NR:

description
PREDICTED: DNA polymerase eta isoform X1

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K03509 POLH; DNA polymerase eta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001566 True 534 mRNA 0.59 3 7727579 7728419

Neighbor

gene id symbol gene type direction distance location
AMCG00001563 NA coding downstream 276 7713750 ~ 7727303 (-)
AMCG00001562 NA coding downstream 34878 7691385 ~ 7692701 (-)
AMCG00001565 NA coding downstream 43981 7677677 ~ 7683598 (-)
AMCG00001564 NA coding downstream 53519 7666480 ~ 7674060 (-)
AMCG00001551 NA coding downstream 101383 7624261 ~ 7626196 (-)
AMCG00001561 tp53bp2 coding upstream 1187 7729606 ~ 7752542 (-)
AMCG00001580 NA coding upstream 168347 7896766 ~ 7909395 (-)
AMCG00001581 polr3f,LOC107655353 coding upstream 189781 7918200 ~ 7921881 (-)
AMCG00001579 kat14,csrp2bp coding upstream 201326 7929745 ~ 7936448 (-)
AMCG00001578 NA coding upstream 208832 7937251 ~ 7939840 (-)
G158635 NA non-coding downstream 47801 7647716 ~ 7679778 (-)
G158622 NA non-coding downstream 152451 7574910 ~ 7575128 (-)
G158620 NA non-coding downstream 170583 7551457 ~ 7556996 (-)
G158619 NA non-coding downstream 176355 7549744 ~ 7551224 (-)
G158582 NA non-coding downstream 413825 7312083 ~ 7313754 (-)
G158681 NA non-coding upstream 37210 7765629 ~ 7765866 (-)
G158701 NA non-coding upstream 116088 7844507 ~ 7859547 (-)
G158752 NA non-coding upstream 219929 7948348 ~ 7950960 (-)
G158767 NA non-coding upstream 267555 7995974 ~ 7996183 (-)
G158883 NA non-coding upstream 574131 8302550 ~ 8304511 (-)
AMCG00001554 NA other downstream 63007 7662091 ~ 7664572 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other downstream 950921 6772338 ~ 6776658 (-)
AMCG00001514 NA other downstream 1217875 6507875 ~ 6509704 (-)
AMCG00001491 NA other downstream 1845259 5880184 ~ 5882320 (-)
AMCG00001487 NA other downstream 1981254 5657962 ~ 5746325 (-)
AMCG00001557 NA other upstream 62962 7791381 ~ 7795966 (-)
AMCG00001594 NA other upstream 363909 8092328 ~ 8095726 (-)
AMCG00001583 ggps1,LOC107728322 other upstream 497150 8225569 ~ 8252204 (-)
G158971 map1lc3c,LOC107701141 other upstream 785948 8514367 ~ 8540258 (-)
AMCG00001615 NA other upstream 1345670 9074089 ~ 9103034 (-)

Expression


Co-expression Network