AMCG00001564


Basic Information

Item Value
gene id AMCG00001564
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7666480 ~ 7674060 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001564
TGAACATGCTGTATCAGATTTACAGCTAGTAAATCCTGAGTCCTGCTGTGCATTGTGTTGCTCCttgccaattaaataaaaactcgCTGAGCCCAACAAAAACTAGAACCTACAGGCGCAGCGTCACATGGTCTGCGGGGTGGGCAGCCCCGCGGTGACGTCATCACAGTAATCCGCCGCGGTCCGGGCTGGTTGTTTACTTCGTTTCGAGCGGAGAGAAGCTGTGCGTGTGAAAATGGCTGTGTCCTGGAAGACCGGGTTTCTGCTGCTCGCTGCGACGTGTGTTGTAGCGGCTGTCGGTTCGGCTGAGAGGCTGGTCGGAGGGCCCATGCAAGCAGACCTGTCCGACGCCGGGGTCAAAGATGCGCTGAGATTCGCAGTGTCCGAGTATAACAAGGCCAGCAACGACGCGTACATCAGCAAGGAGTCGAAAATCATTGATGTCAAGAAACAGGTTGTTGCAGGGATTAAGTACATCTTCACAGTGGAGATGGTCCGCACATCTTGCAGAAAGGGAGGAGTTGAAGCTTTGGAGCTGTGTGCCGTGCACGGGGATGCTGAGGTGGCTAAGGCCCGCACATGCACCTTTGAAGTGTGGTCCCGTCCTTGGATTCCTGAAACCAGGCTGATAAATAACTGCAAAGCTTTGGATATGAAGATGTCTGTGTCCTGGAAGGCCACTGTCCTGCTGCTCGCCATGCTGTTTGCTGTAGTGGCTGTTGGTGCCGCAGACCCTATGGGTGGAGCGCCAATGGAAGCAGACGTCAACGAACCTGAAGTCCAAGATGCTCTGAGGGTGGCAGTGTCCGAGTATAACAAAGCCAGCAACGACATGTTTGCCAGCAAAGTGGCCAATGTCGTTGATGTCAAGAAACAGGTTGTTGCAGGGATGAAGTACATCTTGACAGTGGAGATGGGCCGCACATCTTGTAAAAATGGGGAAGCTGAGGTGTGGAAGCTGTGTGTCATGCATGAGGAAGCTGAACTTGCAACGACTCGCACATGTACCTTTGAAGTGTGGTCCCGTCCTTGGCTTTCTGACACCAGGCTGCTGAAGACAACTTGC

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K13899 CST3; cystatin-C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001564 True 1066 mRNA 0.53 6 7666480 7674060

Neighbor

gene id symbol gene type direction distance location
AMCG00001551 NA coding downstream 40284 7624261 ~ 7626196 (-)
AMCG00001552 NA coding downstream 64913 7599645 ~ 7601567 (-)
AMCG00001553 NA coding downstream 77957 7586658 ~ 7588523 (-)
AMCG00001555 NA coding downstream 82230 7581007 ~ 7584250 (-)
AMCG00001549 NA coding downstream 99403 7557223 ~ 7567077 (-)
AMCG00001565 NA coding upstream 3617 7677677 ~ 7683598 (-)
AMCG00001562 NA coding upstream 17325 7691385 ~ 7692701 (-)
AMCG00001563 NA coding upstream 39690 7713750 ~ 7727303 (-)
AMCG00001566 polh,LOC102796828 coding upstream 53519 7727579 ~ 7728419 (-)
AMCG00001561 tp53bp2 coding upstream 55546 7729606 ~ 7752542 (-)
G158622 NA non-coding downstream 91352 7574910 ~ 7575128 (-)
G158620 NA non-coding downstream 109484 7551457 ~ 7556996 (-)
G158619 NA non-coding downstream 115256 7549744 ~ 7551224 (-)
G158582 NA non-coding downstream 352726 7312083 ~ 7313754 (-)
G158583 NA non-coding downstream 360265 7305236 ~ 7306215 (-)
G158681 NA non-coding upstream 91569 7765629 ~ 7765866 (-)
G158701 NA non-coding upstream 170447 7844507 ~ 7859547 (-)
G158752 NA non-coding upstream 274288 7948348 ~ 7950960 (-)
G158767 NA non-coding upstream 321914 7995974 ~ 7996183 (-)
G158883 NA non-coding upstream 628490 8302550 ~ 8304511 (-)
AMCG00001554 NA other downstream 1908 7662091 ~ 7664572 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other downstream 889822 6772338 ~ 6776658 (-)
AMCG00001514 NA other downstream 1156776 6507875 ~ 6509704 (-)
AMCG00001491 NA other downstream 1784160 5880184 ~ 5882320 (-)
AMCG00001487 NA other downstream 1920155 5657962 ~ 5746325 (-)
AMCG00001557 NA other upstream 117321 7791381 ~ 7795966 (-)
AMCG00001594 NA other upstream 418268 8092328 ~ 8095726 (-)
AMCG00001583 ggps1,LOC107728322 other upstream 551509 8225569 ~ 8252204 (-)
G158971 map1lc3c,LOC107701141 other upstream 840307 8514367 ~ 8540258 (-)
AMCG00001615 NA other upstream 1400029 9074089 ~ 9103034 (-)

Expression


Co-expression Network