AMCG00001487


Basic Information

Item Value
gene id AMCG00001487
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5657962 ~ 5746325 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001487
GCCCAGAACCAGCTATGGAATGGACCAGAAACGAGTGTCTTCCCAGATATTAAGTTGAGATCACACAGCCTCAGAGtTCCCAAGCTGCCTGCCACCCACAGATTTTCCCAAGAGATCCTGTCTGGGAACTGCTTTGCAACCGTTAACTTGCTCGGCGGCTTTTTGTTCCTCTCAAGGGAAGTGTGCATCAACTCGGGATTGTCCACATCCTTGGAGCTGAGGCTGGGTAGAAGTTCAGCCAGATGGAGACGGGCTTCTTCCCTTGGTATCACCTTGGAATCGCCCCCCTACGAGACCGCCCTCCGACGTGGAGCGAAGGTGCAGCCAGCCATGACACAGGTTTGGCCTCTGGCCTGGTACTGGAGGCCGCTCCTGTCTTACCGCTTGGCTCTACAGCAGactAATTCTACTGAAACCTTTTCTGTAGGTGGGGAAATACCTCCCAGAGTCAGTGCTAAACTCCAGACAGCGTCCCCACCAACGCACCGTCTCCAATCCAGCTGGAGACAGGCTGACTGGTCTCCCCACACTGGAGATGAAAGTAGAGCAGTCGTGGGCCTTCTAGACTCAGCGCGGCATGATTTTGTGTATCCCTGTAAACTCTCGATCGCAAAGCACACAGCTCAGAGCAGGGCACAAATGCAAGACTTAAATCAAAGTTTGGAGAAGCTCAATGAGGCGACGAGAGGGCGCTCCTTATCCACGCTGTGGGTGACAGTGAAAATGCCGTGGGCGGTGGGGACACAGAGAGCCTTTGTTGTACTGTTTGTCATACCATTGACAGTAATAAGAGGCCTGATGTCATCTCTCTTGAAACCGGTGTTGGGCTCGGCGGCTCCTGACAGAGCTCTGTTCAATAGGCCGACATTAAAAGTGCCCCTCCGTCAGTGCTCTGAGGGGGAGAACAGTCTCGGGCTGCCCGTAAGCGGGGAAACGCTTCTGCACGTAGtttcaatATTGATAGTTGAGGTTGCTACACGATTGCCGAAAGCAGCACAAGAATTGATGGCATCTCACTGTGAAGTTGTGAGCGTCTGTGACAATTACTTGATTGGGCATATCCTCCACACCAGCTACCTTCCTGCCATATTTGAGTTTCACTGCAATGACCGCAGCCATGGCAAAGTATTTAAATCAAGACTACCTGACTCAAGAGACTCGATACAGatagATATAGGTCCCCACAGTAAAAACAGCCAGAGAGAAGACTCTGCTGCACTGGAATCGGACGGTCATGTGATCGAACAGATCCTTCAAAGCACCCCGTTCATAACAGattCCAAAAACGAATAG
>TU199216
AATGATTCAGTGCTATTTATGTATCCTTGTCCGCAGGTCCCCACAGTAAAAACAGCCAGAGAGAAGACTCTGCTGCACTGGAATCGGACGGTCATGTGATCGAACAGATCCTTCAAAGCACCCCGTTGTGAACGGTTACGATGAAGCGCAAGATGCTGTACAGATGTCTCCCTTACATACTTCAGTGAACTTGCAGCATAACAGGTCAGTGCAATATATGGTCCACTGGATTCCATCTTGGTTCAGTCGCTCTtgctaaatatattatttttatcaataTATGCCTTCTAACTGTTGGATATGTACACTTACTGTCATACCATTTTACCGTTCAATAAAGTTGATTCTTTGTTCATTGTTCtccattgatttattaaatggGTATTCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001487 True 1293 mRNA 0.52 15 5657962 5746325
TU199216 False 390 lncRNA 0.40 3 5659764 5661214

Neighbor

gene id symbol gene type direction distance location
AMCG00001484 NA coding downstream 232301 5419465 ~ 5425661 (-)
AMCG00001485 NA coding downstream 239831 5417495 ~ 5418131 (-)
AMCG00001481 NA coding downstream 277760 5377430 ~ 5380202 (-)
AMCG00001482 slc30a6 coding downstream 339052 5314695 ~ 5318910 (-)
AMCG00001472 NA coding downstream 423903 5228893 ~ 5234059 (-)
AMCG00001490 LOC104944990 coding upstream 8710 5755035 ~ 5800959 (-)
AMCG00001492 NA coding upstream 76420 5822745 ~ 5870265 (-)
AMCG00001495 NA coding upstream 165327 5911652 ~ 5914357 (-)
AMCG00001494 arfgef3 coding upstream 178238 5924563 ~ 5948685 (-)
AMCG00001496 NA coding upstream 202649 5948974 ~ 5950705 (-)
G158017 rtn4 non-coding downstream 723089 4914789 ~ 4934873 (-)
G157970 NA non-coding downstream 1005956 4651338 ~ 4652006 (-)
G157911 NA non-coding downstream 1388102 4263926 ~ 4269860 (-)
G157850 NA non-coding downstream 1504514 4095235 ~ 4153448 (-)
G157798 NA non-coding downstream 1741827 3914113 ~ 3916135 (-)
G158222 NA non-coding upstream 81171 5827496 ~ 5827789 (-)
G158238 NA non-coding upstream 158225 5904550 ~ 5909009 (-)
G158245 NA non-coding upstream 171475 5917800 ~ 5919711 (-)
G158247 NA non-coding upstream 174391 5920716 ~ 5921922 (-)
G158260 NA non-coding upstream 251802 5998127 ~ 6001058 (-)
G158207 NA other downstream 60123 5595384 ~ 5597839 (-)
AMCG00001483 NA other downstream 214381 5441627 ~ 5443581 (-)
G158123 NA other downstream 239719 5377430 ~ 5418243 (-)
AMCG00001426 NA other downstream 1761883 3874038 ~ 3896079 (-)
AMCG00001416 LOC107564242 other downstream 2136254 3518875 ~ 3521708 (-)
AMCG00001491 NA other upstream 133859 5880184 ~ 5882320 (-)
AMCG00001514 NA other upstream 761550 6507875 ~ 6509704 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other upstream 1026013 6772338 ~ 6776658 (-)
AMCG00001554 NA other upstream 1915766 7662091 ~ 7664572 (-)
AMCG00001557 NA other upstream 2045056 7791381 ~ 7795966 (-)

Expression


Co-expression Network