G157798


Basic Information

Item Value
gene id G157798
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3914113 ~ 3916135 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198712
NNcacacacacacatacataaatattaaaatgatttaaaagttAATAATAGTATCCCTTTCAAAGAGCtataggtttatttaaaaaaataatcacctTACCACGCAGTTAGTATTAAAATTGAATACACTGGCTACTCGAAGGTGCTAAGCTGAAGAACAGTAATGATGAGAATTCAAAGCACCAATGTATCTCTTTAACGCTCTCAGTACAGTGTACATATACTATCAAAGATCAATTTCTCAGCTTTTGTAACAGAATGTGTTTATGCATTCCTAGCCATTTATATTTGGAGGTAATTTAGTACATGATAAATCTAGTTGAATTACTCAAACATATAGTGTTCCTCAGTCATAATCCATTGAACAATAAAAAGCATGGTCTAAATACTGTCCTGTTGTGCCCTCAGGATTGTATTCTTCATCATAAAAATAGCTTATGTCTAAGACAAGTGCTGATGCTAGTTGCCTGATAGTGGCATGTCAGTTTCACCATtggttttaatatataaaaaataaacatgtaaacatttgaattaaataacaaatgtcCTTGGTTAGAGAGACCGCATTGACAATAAAACACCTAGATAGGATAAAACTGTTAACAATTGCTGGATTCCAGATTCTatcatgataaaaacaaataataataattattaaaaaaaaatctcaaaaagCACTAGATATCTATACTACATTTTCttccaaatggaaaaaaatcttaattcaAATTGTAACAGATGTAAAACCTAATATACATTGAAGAATAATGCCCccagagaaaaaaatctataaacgTTTTAATGCCAGCCCTGATTATTGCTGTGCATCTCCTGGCTGAGACTGGTTAAAGTAGCTccaaaacatgaaaatcaatCTACAGACTGAGAGGAACTGACTTTTTCATAAAGCATAAAAACAACCAACAGTtaacaataatagtaaatgGCAGGCAGTGAATAGTTCCAAAACAAACTAACGGCACCCAGAATGTGTTcaaaacaaaccttttaaaTCCTCCCCCACCATTAGACAGGCAGACAAACCATAATAGGAGCTCAGACACCCAAACTATGCCATGCCCTCCCCCGCCTTCCGAGTAATGAGTTCAAGCCTATAGATTTGCAGACACAAAACACTTGGACCCAGTCAGCACCGGAGTAAAACGCTGCGTCTAAATACATCGGCTGGGGGGGCGAGTCCCGAGGTCAGACCCTCAAAAGGGAAGGCTGAGAGGCACACGCACCGTCCTGACAGCTATGCCTACATATATgagtttttttgtaatgcaccAAAGATTAGGAGGATTTTGTGAAGTATTAATAGGCCATCCCTGATATTTCACTAACCATTCAATTCCTACTGTGGCCACAGTGAAAGCCTTATTTTGTTTCCCACTATAAGCTTTGTGGTGGAGATGTCAAGAATAGAAAAGGATCGGATATTAAAACAGAAGGAATTGCTTAGTACATTCCCAATTCTCAAAAGTCTatctcagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctctctctctctctctctctctctctctctctctctctctctccccattgtCAGGGAAAAGCATCTCCAAGCTACCAGATCTCTACATTCTAATGACAATTTAGGCACACAAAGGAAACCAGGTATGGGGAACtcttggatttttgtttttatgtctaTACAGGCAATAAATCTGTGTTAGGGTAGACATAGTGCAAGGGAACCCAGGGCCCAGTTTGTTTCAGGTGCAATCTGGGGCCCTGTCTGGCCTCTATGGGTCGCGGCGGATAAACCAGATCTCGTTTCTCCGGCAGGGCACACCGGGGTTCTGGTACACTGCCACCATGTAGACGTCCCTGTGGAAGTCGTCCGTGGACCCCAGCAGCTCCCACAGCAAGCTGATCTGCCTGGAAATGGTCTCCTCGGTGGTCGTCCCGTAGAACACC
>TU198713
NNcacacacacacatacataaatattaaaatgatttaaaagttAATAATAGTATCCCTTTCAAAGAGCtataggtttatttaaaaaaataatcacctTACCACGCAGTTAGTATTAAAATTGAATACACTGGCTACTCGAAGGTGCTAAGCTGAAGAACAGTAATGATGAGAATTCAAAGCACCAATGTATCTCTTTAACGCTCTCAGTACAGTGTACATATACTATCAAAGATCAATTTCTCAGCTTTTGTAACAGAATGTGTTTATGCATTCCTAGCCATTTATATTTGGAGGTAATTTAGTACATGATAAATCTAGTTGAATTACTCAAACATATAGTGTTCCTCAGTCATAATCCATTGAACAATAAAAAGCATGGTCTAAATACTGTCCTGTTGTGCCCTCAGGATTGTATTCTTCATCATAAAAATAGCTTATGTCTAAGACAAGTGCTGATGCTAGTTGCCTGATAGTGGCATGTCAGTTTCACCATtggttttaatatataaaaaataaacatgtaaacatttgaattaaataacaaatgtcCTTGGTTAGAGAGACCGCATTGACAATAAAACACCTAGATAGGATAAAACTGTTAACAATTGCTGGATTCCAGATTCTatcatgataaaaacaaataataataattattaaaaaaaaatctcaaaaagCACTAGATATCTATACTACATTTTCttccaaatggaaaaaaatcttaattcaAATTGTAACAGATGTAAAACCTAATATACATTGAAGAATAATGCCCccagagaaaaaaatctataaacgTTTTAATGCCAGCCCTGATTATTGCTGTGCATCTCCTGGCTGAGACTGGTTAAAGTAGCTccaaaacatgaaaatcaatCTACAGACTGAGAGGAACTGACTTTTTCATAAAGCATAAAAACAACCAACAGTtaacaataatagtaaatgGCAGGCAGTGAATAGTTCCAAAACAAACTAACGGCACCCAGAATGTGTTcaaaacaaaccttttaaaTCCTCCCCCACCATTAGACAGGCAGACAAACCATAATAGGAGCTCAGACACCCAAACTATGCCATGCCCTCCCCCGCCTTCCGAGTAATGAGTTCAAGCCTATAGATTTGCAGACACAAAACACTTGGACCCAGTCAGCACCGGAGTAAAACGCTGCGTCTAAATACATCGGCTGGGGGGGCGAGTCCCGAGGTCAGACCCTCAAAAGGGAAGGCTGAGAGGCACACGCACCGTCCTGACAGCTATGCCTACATATATgagtttttttgtaatgcaccAAAGATTAGGAGGATTTTGTGAAGTATTAATAGGCCATCCCTGATATTTCACTAACCATTCAATTCCTACTGTGGCCACAGTGAAAGCCTTATTTTGTTTCCCACTATAAGCTTTGTGGTGGAGATGTCAAGAATAGAAAAGGATCGGATATTAAAACAGAAGGAATTGCTTAGTACATTCCCAATTCTCAAAAGTCTatctcagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctctctctctctctctctctctctctctctctctctctctctccccattgtCAGGGAAAAGCATCTCCAAGCTACCAGATCTCTACATTCTAATGACAATTTAGGCACACAAAGGAAACCAGGTATGGGGAACtcttggatttttgtttttatgtctaTACAGGCAATAAATCTGTGTTAGGGTAGACATAGTGCAAGGGAACCCAGGGCCCAGTTTGTTTCAGGTGCAATCTGGGGCCCTGTCTGGCCTCTATGGGTCGCGGCGGATAAACCAGATCTCGTTTCTCCGGCAGGGCACACCGGGGTTCTGGTACACTGCCACCATGTAGACGTCCCTGTGGAAGTCGTCCGTGGACCCCAGCAGCTCCCACAGCAAGCTGATCTGCCTGGAAATGGTCTCCTCGGTGGTCGTCCCGTAGAACACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198712 False 1977 lncRNA 0.40 2 3914113 3916135
TU198713 True 1979 lncRNA 0.40 2 3914113 3916135

Neighbor

gene id symbol gene type direction distance location
AMCG00001425 hnrnpll,LOC105006898,LOC106577097 coding downstream 71482 3825451 ~ 3842631 (-)
AMCG00001424 LOC108441890 coding downstream 112628 3779562 ~ 3801485 (-)
AMCG00001423 gpr137b,LOC105902257,LOC102792340,LOC104924458 coding downstream 314656 3589190 ~ 3599457 (-)
AMCG00001418 NA coding downstream 405562 3507876 ~ 3508551 (-)
AMCG00001419 NA coding downstream 406280 3491994 ~ 3507833 (-)
AMCG00001442 crip3 coding upstream 287796 4203931 ~ 4226910 (-)
AMCG00001449 NA coding upstream 454390 4370525 ~ 4371684 (-)
AMCG00001444 LOC106577203 coding upstream 499378 4415513 ~ 4436845 (-)
AMCG00001443 LOC108411957,LOC107753489,LOC108270513,LOC105026838,LOC106564801,LOC103369331 coding upstream 554946 4471081 ~ 4484279 (-)
AMCG00001454 NA coding upstream 599249 4515384 ~ 4516307 (-)
G157792 NA non-coding downstream 12795 3894743 ~ 3901318 (-)
G157778 NA non-coding downstream 39281 3874610 ~ 3874832 (-)
G157763 NA non-coding downstream 142230 3769786 ~ 3771883 (-)
G157696 NA non-coding downstream 348616 3555480 ~ 3565497 (-)
G157680 NA non-coding downstream 407621 3506280 ~ 3506492 (-)
G157850 NA non-coding upstream 179100 4095235 ~ 4153448 (-)
G157911 NA non-coding upstream 347791 4263926 ~ 4269860 (-)
G157970 NA non-coding upstream 735203 4651338 ~ 4652006 (-)
G158017 rtn4 non-coding upstream 998654 4914789 ~ 4934873 (-)
G158222 NA non-coding upstream 1911361 5827496 ~ 5827789 (-)
AMCG00001426 NA other downstream 18034 3874038 ~ 3896079 (-)
AMCG00001416 LOC107564242 other downstream 392405 3518875 ~ 3521708 (-)
G157671 NA other downstream 421403 3489767 ~ 3492710 (-)
G157593 NA other downstream 654158 3222677 ~ 3259955 (-)
AMCG00001396 srsf7 other downstream 1894249 2002361 ~ 2019864 (-)
G158123 NA other upstream 1461295 5377430 ~ 5418243 (-)
AMCG00001483 NA other upstream 1525492 5441627 ~ 5443581 (-)
G158207 NA other upstream 1679249 5595384 ~ 5597839 (-)
AMCG00001487 NA other upstream 1741827 5657962 ~ 5746325 (-)
AMCG00001491 NA other upstream 1964049 5880184 ~ 5882320 (-)

Expression


Co-expression Network