AMCG00001425 (hnrnpll,LOC105006898,LOC106577097)


Basic Information

Item Value
gene id AMCG00001425
gene name hnrnpll,LOC105006898,LOC106577097
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3825451 ~ 3842631 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001425
ATGAGAGCGCTCCTAATCCGAGGTCTCCCTTTACAGGACAATGGGGACGATGCCCACCGGATCGCCCCGTCCCCTGTGGTCCATGTCCGGGGGCTGTGTGAGTCGGTGGTGGAGGCCGATCTGGTGGAAGCCTTGGAGAAATTCGGAACAATATGTTACGTGATGATGATGCCCTTCAAGCGCCAGGCCCTGGTGGAGTTTGAGGGTGTGGAGAGCGCGGACAAGTGTGTGGCGTGTGGCGCCAGCGAGGCCGTCTACATCGCGGGCCAGCAGGCCTTCTTCAACTACTCCACCAGCAAGAGGATCACCCGGCCCACCAACTCCGACAACCCCAACAGCGGCAACAAAGTCCTGCTCCTGTCCATCCAGAACCCCCTGTACCCCATTACTACGGATGTTTTATATACCGTGTGCAATCCCATTGGAAATGTGCTGCGCATTGTGATTTTCAAGCGGAACGGGATTCAAGCGATGGTGGAATATCCTTTTCAAATTGTGCTTCAGCCTCAGCCAGAGGAAAGCTATGCAAGGAGCGCTCAGAAAGCTAAAGCTGCCCTCAACGGAGCCGATATTTACGCCGGCTGCTGCACCCTGAAAATCGAATACGCCCGGcCCACCCGCCTTAACGTAATCAGAAATGACAATGATAGTTGGGACTACACTAAACCGTATTTGGTTAGACGAGACCGAGGAAAGGGGAGGCAACGACAAGCTATTCTAGGAGAGCACCCGTCCTCCTACAGTGATAATGGATACGGGTCCCACTGCCCCCTGCTGCCGCTGCCCAGTAATAACAGGTATAAAATGAGCGCTCACGACATCCCAGAGGTGGTGGCCTACCCGCTCCCCCAGACCTCCTCCTACATGGGCCACTCCTCCAGCTCCGTGGCCATGGTGAGCGGCCTGCACCCCAGCAAGATGAACTGCACCCGTATCTTCAACCTCTTCTGTCTCTACGGCAACATCGAGAAGGTGAAATTCATGAAGAGTGTCCCAGGCACGGCTCTGGTGGAGATGGGCGATGAGTACGCTGTGGACCGGGCCATCACACACCTCAACAGCATCAAGGTGTTTGGGAAGAGGCTCAATGTCTGTGTGTCCAAGCAGCAGGCCGTCATCCCCAGCCAGGTGTTCGAGCTGGAAGATGGCACCAGCAGCTACAAAGACTTCGCCATGACCCGAAACAACCGCTTCACCAGTGCTGGCCAGGCCTCCAAGAACATCATCCAGCCCCCCTCCTGTGTCCTGCACTTCTACAACGTGCCACCCTGCGTCACCGAGGACGAGCTGCAGAGGttgTGTACCGAACACGACGTGCCTGGGTTCATCAAGTTCAAAGTGTTCGATGCAAAGCCCTCATCCAAAACGATCTCAGGGTTACTAGAGTTTGATACTAAGACGCATGCCGTTGAAGTCTTGACGGTCCTGAATCACTACCAGATCAGAATACCAAgATTTTGCACCGACCACCTGAATACAAGTCTCCCAGCAACACATCAGGTGGATATGAGAGAGCCGGTGAATCGATGGATCCAACCCGTACACCCTGAAACTCTGCTTCTCCACTTCATCGCACCTATAAAGCTGGAGACCAGTGTCGAGTCAGAGGGACAGCTGCCAGGAGAGCCACGATCCACCCTGATCGCCGAGGGCAGCCGACGGATTGCGAAGCTGCCTTTTCTCAGCCTTCATTAACTCATTGTGATCATGCAGCCAGAGGACGagagtatatatacatatatatcacacTTAAAATCTTACAGTAGACGATCTGGGGCGCCAGACAAATGAGGCGAGGGGAAAGGGCGTCCTGGTTTATCCGAGTGATCTTGTGGGTAAAAcgaaagaaaggagagagaatcCTATTCAAGCATCCCTGAGATTACTTGATTTCAATGAAAATGATGTTATTGCCGTGAAACGCCAGAGCAGTGTGGTGTTTTTAAAAGATTCCAGCGGATCCTTGCTCTCTGTTTCGGACGTGAACGGATTTCACTGACCTATACGatacagtgtattattttaccAAATTCTGCAAGCTTGttcaagtttaattttattccGTGGTTGTGTGAGGGCCTAACTCCCAGACTTGGGCTCACTTGGTACTTAAGAGAACAACATGTTTATAGACTGTAATATTTAGACCACATTGTAATATATGAATGTGTATAGTACTTAAGGGGCGGGGCGGGGAAATCTAATGTAAGACCTGGTGTCTGACTTCAGAATAGAGCAAAACCATTTTGTTAGAGAAGGCACTTTGATCAGTTTTAGACGCTGTGTTTGTACAATGTTTACACCTAGATGTCCATGATTTTTGTAGCCGTCAGTGTTTTCAGTGcattgtttcagtgtttgtaCCTGGCATGGCGTTTCCACTGTGAGCATGAGTCATTAAACATTTGCTGGTTACTA

Function

symbol description
hnrnpll Enables mRNA binding activity. Involved in positive regulation of RNA splicing. Located in membrane.

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein L-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001425 True 2418 mRNA 0.51 14 3825451 3842631

Neighbor

gene id symbol gene type direction distance location
AMCG00001424 LOC108441890 coding downstream 23966 3779562 ~ 3801485 (-)
AMCG00001423 gpr137b,LOC105902257,LOC102792340,LOC104924458 coding downstream 225994 3589190 ~ 3599457 (-)
AMCG00001418 NA coding downstream 316900 3507876 ~ 3508551 (-)
AMCG00001419 NA coding downstream 317618 3491994 ~ 3507833 (-)
AMCG00001417 NA coding downstream 335331 3489094 ~ 3490120 (-)
AMCG00001442 crip3 coding upstream 361300 4203931 ~ 4226910 (-)
AMCG00001449 NA coding upstream 527894 4370525 ~ 4371684 (-)
AMCG00001444 LOC106577203 coding upstream 572882 4415513 ~ 4436845 (-)
AMCG00001443 LOC108411957,LOC107753489,LOC108270513,LOC105026838,LOC106564801,LOC103369331 coding upstream 628450 4471081 ~ 4484279 (-)
AMCG00001454 NA coding upstream 672753 4515384 ~ 4516307 (-)
G157763 NA non-coding downstream 53568 3769786 ~ 3771883 (-)
G157696 NA non-coding downstream 259954 3555480 ~ 3565497 (-)
G157680 NA non-coding downstream 318959 3506280 ~ 3506492 (-)
G157664 NA non-coding downstream 347857 3475624 ~ 3477594 (-)
G157646 NA non-coding downstream 383098 3436345 ~ 3442353 (-)
G157778 NA non-coding upstream 31979 3874610 ~ 3874832 (-)
G157789 NA non-coding upstream 39209 3881840 ~ 3917086 (-)
G157792 NA non-coding upstream 52112 3894743 ~ 3901318 (-)
G157798 NA non-coding upstream 71482 3914113 ~ 3916135 (-)
G157850 NA non-coding upstream 252604 4095235 ~ 4153448 (-)
AMCG00001416 LOC107564242 other downstream 303743 3518875 ~ 3521708 (-)
G157671 NA other downstream 332741 3489767 ~ 3492710 (-)
G157593 NA other downstream 565496 3222677 ~ 3259955 (-)
AMCG00001396 srsf7 other downstream 1805587 2002361 ~ 2019864 (-)
G157339 NA other downstream 2036609 1750051 ~ 1788842 (-)
AMCG00001426 NA other upstream 31407 3874038 ~ 3896079 (-)
G158123 NA other upstream 1534799 5377430 ~ 5418243 (-)
AMCG00001483 NA other upstream 1598996 5441627 ~ 5443581 (-)
G158207 NA other upstream 1752753 5595384 ~ 5597839 (-)
AMCG00001487 NA other upstream 1815331 5657962 ~ 5746325 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G1722 hnrnpll,LOC108249392,LOC104956991,LOC106530872,LOC103368822 unknown NC_053112.1 CM020909.1 5076606 ~ 5085518 (-)