G157339


Basic Information

Item Value
gene id G157339
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 1750051 ~ 1788842 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198155
AAATGGCTTCTTCGTACACTGAATGatgacTCCAGACTGTGATTGGTTCACCTGGGTTCATTGAGTGTATGCTGAGGGTTCTTGGGCAGAAGGCAGTGGATGATCCAGGGACCTACGGAAATGAATGCCTGATGTTGGATGGTATGaccattagaaaacagatatgATGATGGATTGTTGCAACGAATGACAGGATTTGGGAGACAACATGGAGACTtgcagtgcctatagaaagtctaatCACCCTTTCAAATTGTTCACCTTTGTTGCCTTATagtcagaaattaaaatgcattgaaatattatgtatataccccacaactttgaaaaaaaagataacagaaatacatcaaaaatcttacataaaaactgaaatagctggGTTGGGAAAGTGTCCACCACCCTTGTAATATCGAGGGTGTAAGCAAGGGTGTATCTATTTCACGTGTAAGCAATCacattcaaaatcacacaccaagttaaagggcctccacctgtgttaaattgtagtgattcacaaggtttcaggataaattcatcAGCttctgtaggttccctctgctgggaagtgcatttcaaagcaaagactcaaccatgagcaccaggGAGCTTTCTAAAGAACtccgggacaaagttgttgaaaggcacagatcaggggctGGGTATAAAAGAATATCGAAGGCCTTggatatcccttggagcacagtcaagacaattattaagaagtggaaggtgtatggcaccaccaacaCCTTGCCTAGGTCAgaccgtccctccaaactggatgaccaagcaaAAAGGAGACTGAGCACAAGGGAGCTTTCAGAAGATCtccgggacaaagttgttgaaaggcacagatcaggggctgggtataaaaatatatcaaaggccttgaatatacCTTTGAGTACtgttaaaacaattattaagaagtggaaggtgtatggcaccaccaagaccttgcctagatcaggccgtcctgccaaactggatgaccgagcaagaaggagactgttcagagaggctaccaaaaggccaatggcaactttgcaggatctacaggcttttatggccaagactggtcaaagtgtacatgtgacaacaatatcccgagcactccacaaatctggcatGTATCAGCAGAGGTGtcatttgcttaattgaatccttaattgcaCTAACAATTCAATGTAAGATCATTAACAGCTCAATTGGACCAAACAAAAAGTCCTCACATGGTTtattgtatataaacatttattgtagATACTAGACTATTGAAAGTAGTGCCCAGAGTTTTTCACCACCTGCCATTATTATTCCTATGGGAAATAGTGGGAAAACTCAGAGCCCAAATTATAAGTGCTGTCTTAAACATGTTGTGAAGCatgttgaaagaaaacaaattctgtTTCTGGGAAACTATGCCAGCAGTTTGAACAGTATTAGCTCAatcacaaaaatacatgttcaaGAAACGGCCTCAAGAAAATGTCTCAGTACTTTGTTAAATTGGTGTCTGCTAGTTTTTATTTGCTCTGAGGTTCACAACCCCATCATGCATGCACAAGAATCCCATAGTCCAGTCACACACCACGTGTGGCACCATCAGTCCACTTGTCAGTGTGCATCACAGAACAGCAGGCTGTAAAAAAGTTCACAGACAAATCTCAGCTCTGTACAGTGACAGCTGTACATAACTGGCATTGTCATCAGTGCTCTGTGTCCTGGGAGGTCCTGATTGCCTTTAATCACTCTCACTTGTTCAACTGTTTAAACACGtttcaacaaaataaagatgaaaatgaacaaaacatctATTTCTCATAGTGTAGTTTCCTTTTGCGTGCATTGCTGAGCTTCTCTGTGATTGTGATTCTCTGTGACCTTTATGGAAACTGACTTCTTACCACAactgtaaagaaagaaatagaataCTCAAGACTGAATATAGCAATATGCAACTAAAGAAATATTATATGCACACAATTGTTTGTTGATCATGCATCCCCAACTTGTAACGTAAATCGCCACA
>TU198157
AAATGGCTTCTTCGTACACTGAATGatgacTCCAGACTGTGATTGGTTCACCTGGGTTCATTGAGTGTATGCTGAGGGTTCTTGGGCAGAAGGCAGTGGATGATCCAGGGACCTACGGAAATGAATGCCTGATGTTGGATGGTATGTGACTGAACTCCTAGGTGGAGAGAAGTATATTTCCTGCTCAGTGGTGCTGCCAGCTTTGTGCCACCTTTCTCGGGTAATGGCGAGCTCAGATGATGACCCTGCCTAAATGGTAAGATTCAAGACTACAGTTACCACAGATCTGGAGAAACGCAAGGAAAATACTAACATCATATGGCTGAAGATAGCCATAGCACTCGACCCAAGGTTCAAGGACCTAAGGTGCCTTCCAAGAACTGAGAGGGGTGAGGTGTGGGCATTGGTCACCAACCTGCTAAAGGAAGAGAAGACTGCACAGCAACCCATTGAAGCAACAGAGTCACAGCCACCAAAGAAGAAAGCTGCCCTCTTTTTGTGTTCAGAGTCTGAGTCCGATGAAGATGAGGAGTCCATTGAAGAAATGTGTTGAGCATTACAAAGCAGAGCCCTGCATCAACATGGAAGACTGTCCACTGCAGTGGTGGTCAGAGCATGCAGGGGCACATGACAGGCTGGCCCACATTGCACGCAGGTACCTGGCAATGCATGCTCTCTGGGCATATTGTTCAGAAGAAGAGACCAGCTTTATCAggtgaaaatgttaacagaCTAGTATGTCTCAGCAGCTGGCTCAGAGGAAAGGAATAGGAGAATAAAAGTGACTGGTGGCTTATGTTTAAGTTTgatgttagattttttttaattgaaaggaaGCTTTGTTTTTGGTATTCATACAGCCATATACTGTACATCAAGGACTTGTGTTTTGTCCCGataaatgctttcaaaacattctgaaagtgattatttttgtgtttttattttccgtAAGATAAAACATAGGATTGTTTTTAACATACTGTACTGTTTCTTAAATGGAAAATGGTTTATTTAGGGCCAAATTTAATCACATTCCAAAATTGCGATTAATCACGATTAGCTGCAGAATATTATGTGATTAAtcgcatttaatttttttaattgtttgacaGCCCTAGTGAAAATGAACGCTGTGAATTAGTCAAAAAAGGGCCTGTGCAAGagaaatatttagtttttcctcaaaattctgaCCAAAATCAAAGAATATTCACAAAGGAGAGACTCTGGAGAGACTTTCTGGACTGGCTCTTATCTCAGTTGAATGTGATGTATGAAGGTATTTAGATCTGGAGGACATAGTGACTGCATTCGCACACACCAAGGCTCGTAAACAACGTTTCTAAAATCAATACTTATTGATGAGCCTCATTGCTactaaatatagaaatattgtgcaaatgaaaatgtttacatgTCATGTTATGTATTTACATGTTCAAGTTcatgtttttggttgtttactgtctatttttgtattttgttatgcaTGTATACTTTTTGAAAGGACCAAGATCACTAAATGT

Function

GO:

id name namespace
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198155 True 2038 TUCP 0.41 2 1763169 1788842
TU198157 False 1529 TUCP 0.40 3 1750051 1788842

Neighbor

gene id symbol gene type direction distance location
AMCG00001397 NA coding downstream 39718 1656248 ~ 1710333 (-)
AMCG00001387 mrpl2,LOC106590008 coding downstream 194988 1537602 ~ 1555063 (-)
AMCG00001386 LOC108240633,LOC103371311,LOC101470936 coding downstream 703316 1045785 ~ 1046735 (-)
AMCG00001381 NA coding downstream 1076826 605904 ~ 673225 (-)
AMCG00001379 NA coding downstream 1275638 464586 ~ 474413 (-)
AMCG00001398 NA coding upstream 78486 1867328 ~ 1868100 (-)
AMCG00001408 dhx57,LOC106577153,LOC107081174,LOC107589582 coding upstream 233117 2021959 ~ 2045438 (-)
AMCG00001409 sos1,LOC106564790 coding upstream 321574 2110416 ~ 2167344 (-)
AMCG00001402 LOC106608247 coding upstream 432325 2221167 ~ 2251759 (-)
AMCG00001401 map4k3 coding upstream 483055 2271897 ~ 2279797 (-)
G157329 NA non-coding downstream 1189 1748546 ~ 1748862 (-)
G157326 NA non-coding downstream 51989 1697837 ~ 1698062 (-)
G157312 NA non-coding downstream 83130 1666628 ~ 1666921 (-)
G157303 NA non-coding downstream 91255 1609480 ~ 1658796 (-)
G157270 NA non-coding downstream 396825 1352997 ~ 1353226 (-)
G157353 NA non-coding upstream 35355 1824197 ~ 1825624 (-)
G157358 NA non-coding upstream 64171 1853013 ~ 1853289 (-)
G157362 NA non-coding upstream 118717 1907559 ~ 1907763 (-)
G157463 NA non-coding upstream 630686 2419528 ~ 2419741 (-)
G157476 NA non-coding upstream 721274 2510116 ~ 2512566 (-)
AMCG00001385 NA other downstream 1156584 474733 ~ 593467 (-)
AMCG00001396 srsf7 other upstream 213519 2002361 ~ 2019864 (-)
G157593 NA other upstream 1433835 3222677 ~ 3259955 (-)
G157671 NA other upstream 1700925 3489767 ~ 3492710 (-)
AMCG00001416 LOC107564242 other upstream 1730033 3518875 ~ 3521708 (-)
AMCG00001426 NA other upstream 2085196 3874038 ~ 3896079 (-)

Expression


Co-expression Network