AMCG00001379


Basic Information

Item Value
gene id AMCG00001379
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 464586 ~ 474413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001379
ATGAGCGATCTGAGCCCAAAAGAAGACGACACGGCTAATCTGCACGGAGTAGCAGGCGAGCTTCAGGACATCTTGAAAAGTATGCAGTCAGATGACCTGTTTGCTAGGAAGTTTAAAGCCTTGAACGGGAACATGGGACCACCGACGTCTTCAAATGCACAAGGGAAATCTGACGGCAAGACAAATGGGACACCAGCGATGCCTAAAATGGGAGTGCGGGCTCGAGTTTCTGAGTGGCCCCCAAAGAAGGATGGCTGGGAGGGCCGCCCGCCCCCCAACTATGAAAGTGTTATGATGGGTTTCCAGAATGGGCAGCCAGACCAAAGCTTGGATGGTGTGGGGGAGCGAAACACAGAAGCCTCCATGGACCTAGAGTTTTCAGAGACCAAATACTCGTTGAGTGATATTTTAAACCAATCTCCCCTCAAGGGGTTGCACCCGATCCGGCAAAGGAGCAATAGCGACGTGACTATCAGTGACATCGACGCAGAGGACATCTTAGACCAGAATGCCGTCAATCCTAACACGGGAGCCTCACTTCACCGGGAATACGGGAGCACATCTTCAATCGACCGCCAGGGTTTATCTGGGGAGAGCTTCTTTGCCATGCTGAGGGGTTACCGGGTTGACACCCTTGACCACCGCAGTATGCCCCCTCTGGGTTTCCCTGAACTGCTGCGTTGCGAAACATCTTTTTCTCCCAGCCTCCAGACTGCAGCGCAGATCTCTCGTGGCGAGTTTGTCAGGATCTCGGGCTTTGATTACGCGGACAGCTCCCTGCTCTACAGCCGGGAACGGGAGAAGTCCTTCATCCGGAGGTTGAAATCTGAAACCACAGAGTCTTCCCTCTTCAGGAAGTTGAGGACCATCAAGAGCGAACACGATGGGCTGCGCTTTTCCACTGACCAGGACGACTGCCGGCTGGAGAAGTACTGCAGGCCCCTTAGTTTCCAGAAGTGCTTCGCTCACTATGATGTTCAGAGCATACTGTTCAACATCAGCGAAGCAGTGGCCAACAGAGCTAACCTTGGGAAGCGGAAGAACACCACCACAGGGGCGTCTGCTGCCTCCCAGTACCAGATGTCAGGGGGGGCGGCGGGGCTGTGTGAGTCCCCTTTGGGCAGTAGGGAGGACCTCAACTCCAAAGAGAACTTGGATGCTGATGAAGGGGATGGGAAAAGCAACGGAATGGTTCTCAGCTGCCCCTACTTTCGCAACGAGATTGGGGGCGAGGGCGAAAGGCGCATCTCTCTGTCCAGGGCGAATTCGGCTTCTTACAGCTCGGGAGAGAATTGCTCGTTTGAGTCCTCACTGAGCTCCCACTGCACCAACGCGGGGGTGTCTGTGCTTGaggtgcccagagaaaaccagCCCATCCACAGGGAGAAAGTCAAGCGCTACATTATAGAGCATATCGACCTGGGCGCCTACTACTACCACAAATACTTCTATGGAAGAGAGCATCAGAACTACTTTGGGGTTGATGAGAATCTGGGGCCAGTGGCTGTGAGTGTCCGCAGGGAAAAGCTGGAGGAAGCCAGAGAGAAGGATGccatgcagtataactaccgcATCACTTTCAGGACTAGCGAGCTCACCACCCTTAGAGGGGCCATACTGGAGGATGCGGTCCCAGCCACCACCCGACACGGCACTGCAAGAGGGTTGCCCCTGAAGGAAGTGCTGGAGTACGTTATACCTGAGCTCAATATCCAGTGCTTGAGGCTGGCTCTCAACTCGCCCAAAGTCCCCGAACAACTGCTGAAGCTGGACGAGCAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001379 True 1782 mRNA 0.55 3 464586 474413

Neighbor

gene id symbol gene type direction distance location
AMCG00001382 sipa1l2,LOC107666899,LOC107719700,LOC107667119,LOC107728329 coding downstream 11452 448771 ~ 453134 (-)
AMCG00001380 NA coding downstream 37307 392584 ~ 427279 (-)
AMCG00001383 NA coding downstream 333157 127712 ~ 131429 (-)
AMCG00001384 NA coding downstream 352438 111534 ~ 112148 (-)
AMCG00001381 NA coding upstream 131491 605904 ~ 673225 (-)
AMCG00001386 LOC108240633,LOC103371311,LOC101470936 coding upstream 571372 1045785 ~ 1046735 (-)
AMCG00001387 mrpl2,LOC106590008 coding upstream 1063189 1537602 ~ 1555063 (-)
AMCG00001397 NA coding upstream 1181835 1656248 ~ 1710333 (-)
AMCG00001398 NA coding upstream 1392915 1867328 ~ 1868100 (-)
G157162 NA non-coding downstream 175345 288538 ~ 289241 (-)
G157116 NA non-coding downstream 437370 26787 ~ 27216 (-)
G157114 NA non-coding downstream 439628 24707 ~ 24958 (-)
G157111 NA non-coding downstream 449211 12811 ~ 15375 (-)
G157193 NA non-coding upstream 73964 548377 ~ 548696 (-)
G157197 NA non-coding upstream 113991 588404 ~ 588618 (-)
G157216 NA non-coding upstream 199124 673537 ~ 674184 (-)
G157230 NA non-coding upstream 319670 794083 ~ 794323 (-)
G157243 NA non-coding upstream 456822 931235 ~ 931725 (-)
AMCG00001385 NA other upstream 320 474733 ~ 593467 (-)
G157339 NA other upstream 1275638 1750051 ~ 1788842 (-)
AMCG00001396 srsf7 other upstream 1527948 2002361 ~ 2019864 (-)
G157593 NA other upstream 2748264 3222677 ~ 3259955 (-)
G157671 NA other upstream 3015354 3489767 ~ 3492710 (-)

Expression


Co-expression Network