AMCG00001381


Basic Information

Item Value
gene id AMCG00001381
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 605904 ~ 673225 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001381
CGCAGTTTCTCAGGAGCAGCCTGTCCACAGTTGCGTCCCATGCTGGATCTCTGTTGCGCCGCATCTGGGACCGTGTCCGATCACAAGAATCAAGGGAGGCCATCCTGTCCTGTGTCCTCTGCATTCTGAACATGCATAAGAAAGTGGACAACTAATCCTTTTGTTTCTGTACCAatattgcttgtttttctttcttggacTTTGAGAGCAAGAGAGTGAGAGGTGTGGACCTTccaagacaaattaaaaaaaaaaaaaaaatgtcagaaagCATCGTCAGGAAAGTCCAGCCCTTCACCATCGGGACCAAACTCTCTGTCCCGGTGGTACCCAAGTGCACAGATTTTGTGGAGACGTATTTGCCCAGCCAGGCATTGGACAACTGCAAAATGCAACACAACCTGAATGACCAGGTCTCTCTCTACCTCGGCCAGTCCCAAATCCACCCCGATGCTTCCCAATTCTCACCCGTGGCCACCCAGGAGGAGATGGCTGAAGAGGACCAGCTCAACAGGAATGCTGTATCTCCCACGGCTGCTTCCAGGTCCATCAGGAAGATAAACATTTCCAGcaccatggaggccactttggAAAAGGGGGCCACAGTGCCAGACTGCCACCCCCCAGCAATACAGACTTCCAAAACTGagaacatcaacaacaacaacaacagcaaccatGGCTCCCAGCCCTTGCCCAGGATTGTGGGGGTGAGCTGTGAGAATAAGCCAAACTCTCAATTTAAGACCCCAGAACTAAGAGCTGTGTCTCCCAGAAAGCACTTCCTGCAAACAGAAAGCCAATCTTGCGGACAAGTTGAAACACCCAACACGGCGAGACTCAGCACACCGTGCCATGATTACAGCCTCACTCAGTGTAATGCCCAGTTCAACAGAGAGATCCTGCAGGCTGAGGCTTGGATCAAAGGGAAACTCCGTGATTTAAAAGATGGCTGCAATATACAAAGATGCCCCCTTCAGGATTGGGAAGAAGTGTCACAGACATTACAGAGGGACCTCAAGGACTTTGAAAATGCCTTGATACAGCTCAACCAGATGGGGGAGCAACTGATTTGCAAGCAAAATCCCACATCTGATCTAGTGAAAAAACAGCTTAGCCAACTCAAGGATCAATGGCACATGCTAAAACAAACGGCAGCAAACCAGTCAAAAGCCCTGGGTGGTGCCAGGAACTTGCAAGAGTTCAACAGAAAAGTCGATAAGCTTGAAGCATGGATAAAATCAAAGCAGGAAGAGGAGCAGTCACTGGCCAAGGTTCTTGGGGAGACCACAGACAAAATCCAGCTCACAAGAAGGATACTGGACTTGAAACAGGATGAGCAACAGTACAGGACCCTTCACGAGGAGATAAACAACCTGGCTCACAAACTCGAGAAACAAGGGAAGAATGAAGGCAAGAATATTTCAGCAAGGAGAAAGCATATCAATAAGATGTGGCTCAAAGTTCAATCACTACTGAAAGACTACCACGAAAACCTTCAGTTGGCTTTAGAGGTCTCTTCGTTTTACCAGCAGGCAGACAACATCATCAGAGCCATAACTAATAAGagGGAACATATTTCTTTTGCAAATGACCAAGCCAACAGTGCTGACAGAGACATAAGGGACATAGCTAGTCAAATTATGATGCTGGATGTGACTGTTTCTCAACTGTCAAACCTCCACCCGACCCTGGCCGCCAGAGTGACCCAGAAGCAGGGTGAAGTGAAGGATGCCTGGGCCCTTCTCCAGAAAGCTGTCAGGAATGAGAAGCCAGGCCTGCAGTCCCCCAGCTCAGATTTCACCAGGGAAGACGGAGACCCGTTGACCCCTGCTAGGGAGTCACAATGCAGCGTGGGAATTGAGTCGCACAGGATCATGGGAAAAGAGGTTAAAGAAGAACAGAACCGTCTCAAAGGATGTGCGaGTGCTAGAGAACCTGGGACTAACAGGAAGTTAATGAACTGTCAAGATGAACCCACACTTTCAAAGAGCCCTACTCCTGTCATAGAAATGAATCCCAGTAATGCGGATGAAGCCATCAGAAGAACTCACGGAGAAAGCAGGAAAGAGAAGACTGATTCCAAGACAGCTTTTTCAAGAGGAAACACACACCTACATGTGCAATTACAGAAATTCACAGTCTCTGCAGATAAGACATTGTCATGGCTGAAGGACAACGTTGCCATGGCCTCCCAGATCTGCTGCACTGCCAGTCTGGATGGCTTTGAAGCTGCAAAGAGGTGTCAGGCCACACTGGAGCAAGAGATCCTGTCCAACAGAGCCAGGATCGAAGTGGTCAAGAAGGAGGGGAGGAGTCTGGTACGGGCGCAGCACCCAGGTAGTGCCAAGATTGAAGAGTTCCTGGGTCAGCTGGAGGTGCTTTGGGAAGAGCTGAAGAAGAGACATCAGAAGAACGTTGTTGTCCTCCAGGAGTCAGAGAAACTGAATTTAAAGGTGATGAAAGTCTTGAAGGACCTCGATGACTTGAAGGCCTGGTTACAGACAGTGGAGTCCTCTATCCGCCAGTCCGCACTTGATAGAGACCCAGAGTCAGTGACAGCAGCCGAGAGGGAGAGCAGTCTGCTGGAGAGGGAGGTGGCCTCTAGGGGCCTGGCTCTAAGGGCACTCAGACAGGAGGTGGACAAACTGAGGAACCAGAGGCACTACCAAGCTGAGCAGCTACCAAGCAGAATGGAAGAGGTGGAGGAGAAGTATCGCTGTGTCCAGCATGCCCTGAAGCAGCAGGCCTCCGAGTTGCAGGACACCCGCATGCTGACCGAATTCCTGGAGAGAGTTGAGATGGAAGAGAGCCAAGAACCCAGGATATTGGGCTATGTGAGCTGTGTGGAACAGGCCCTCCCCAGCAAACTGGACTCTGAGTCATCACTGCTGGGGCTGTCCGACCGAGGGGACCAGCTGATTGAGAGCATAGCTGACCCTGTTGAGGAGCTGCGAGAGGCGGTAGAGATGCTCAACGAcacagtcagagagagaggcaggtcTCTCACCCAGGACCAGGGTATCCAGGAGCTTCTGAGCCGGCACTCAGCCCTCACTGTCCGGATTAATGAAAGACTGTCGAGGAGCAGGGAGCTGAATGCTGATATCCAGCAAATGGAGACTGAGATGGCCGTAAAGTGTGAGCCTGACAAGTGTGGACTATACAGCTTGGAAGACCAACAAGATGATCTGGAAATTGACTACGATGTGATCAAAGAGGATGTCGATGAGATGGAGAAGCTGGCTGCCCGATTGGAGGACCTATGCCCAGAAAGAATGCATATTCTGGCAGAAGATGTCCAGGCGACACAGCAAGCCTGGGAAGAGCTGGGCAAGAGTATTGCAGAAAACCGCGGCAGGCTCCGACAGTTCCTGCAGCTGCAAGATTTTTTCAGAAATTACCTGGCAATGATTTCATGGACGGAGGACACCCGTGCCTGCATTTTCTCTGAGACcccagtgcattctgggaaggGGAGTCAGGTGCCAATGACAACAGAACTGGATGTGAAGATTGAGCAGAAGTTTGCAGAGTTTGATGAGCTAGCTGAAGCTGGACAGAAGCTAATAGATGAGGAGCATCCTTTGACTGAAATGGCAAGTTCTAATTTTGCACTAAGTATCAAGGAGAGGACAGAGGAGTTGAGGAGCATGCTGGGATGGATTTTGGTCCGCTGGAGGGCACAAAAACACCAGAGGAATCGTGGGAAAAGGAAAGCAGAGCCAAAAAGTGATGTCATTTACTCAGAAGCTACAGTCTGCACACCACATCTGCATCAGAAATCCCCCCTCCCAGAGACACCGCCAACATTAAAGCAAACATCTGAGCGAGGACAGGCCCAGCCTGAGCCACCGAGCCCAGCCCAGTGCAGTGAGGAGCTGTCTGAAGCTGGCTACGAGGTGATGGCGCAGATCAGTCAGAAGAGGAGTGACCTGAGCTCTCCCGGAGGAGCTCTACAGGGTCTGCTGGCTGTGGAGTCCCCAGAATCACCCTTCCTGGTCCTGAAGGAGCCCAGTGCCCCATCGCTGGGTGGCACTGTCAATCTGATCCTCAGTTTTGGTAAAATGGGAGACAGTCAACTGCAACTTCAAGACCCAGTGGAGGAAGAGCCAGTTCACCGGGTAAGTACCTATTTGCATGTTAAGGACAACAACAAAGCTATGACGCCTGTGTATGAGAGTATTACTTTGCCCCGTCTTGCAAGCAAGGCAGGGCAGCCAGCCTCCACCTCCCCTCCACCCAAGGTGAGCAGCGTCTCCTTCCACACCTTGCCGAAGATCACTTCCAACTCCATCTTCAACAGCCTGAAGAGGAGgagtaagaagaagaagaaaagagatgTCCGCAGACACACCATCCAGAAGATCATGGGTGTCAATCAGGAGGAATCTGGCATCCCTGGAGATAGTGTGGTCTCCTACCACACCAACACATGGCCtttgaaggagaggaagaaaggaaCCAAAATCCCCAGCCCTGTCCATGGACAGCTCCTGGACTATGTCAAAAATCCACTAGCAAAAGACATTGATGCAGAATGTGCTAGCATTTCAAACTTTGTTCAGTCAGAGTCAAGATGCAGCAAGGGTTTGACTGATGGTGCCACGTCACAGGTTAAGAACAATTGCAAACACCTTTCATTGGGCTCTGTGTTGAGCTTTGAGCTGCCTAAGGATTTGAGCCTCATAAGCAGCATTCCAGATCTTATCAAAATAGGTCCTCAGGAACTAAAAGGTGGACACAACCTCAGGAATAATACTGACGCCCAAGACATGTATAGCAGGAAATCAGAGACCGGTACTGAAAGATGTGCAGTCTTGAGTACTTTTAAACAGCCGTGTTTGAAATCAGAACTCTTTGAGAAAACTTCCAAATACTACCCTCAACAGGAAGTGAGTTTGGTAAATGCTAATCATGGGTCTCAACAGTGTGATTTAGATGCTTATTCAGTCTTTTCTCATTGTGATCAAAATTCCAAAAGGGAAGACCATCCTCAAACCAAAGATCCGACCATTTTCAGTGATGACATATCAGACTTAAAACTTAACCGTCTGTCCCGAATCAGTGGCCTGCATGAGGAGGTTGGTCAGGAGTGGGAGAAGCTTGCGGCCGTACTGGACTCTACTGGAAATCTATACCGTTTCAAAGAAAGCTCTGAAATCAAATGTCCAACAAGGACCTCCAACCCTGTTGAAGATCAAAAGTCTGTGGTCAAAGAAAACGAGGATTATGGGGATTTGGGTATCTGCAGCACAGGGAGCATCCATCTGTATGTTGACCAAAGCACTGAATTTCCAGATGATCCTATTCCGATTAAAGTCACTGGAAGATCTGTCCCCCATGAAAAGACAGAAAGTGCAGCATGCAATGGGGAGCTGAGTGGGGGTGACCTTGGTGCAGCAGCTGTGGAAGTCATCCATCCAGACCACCAGCAGTtcgaggaagaggaagaggaactGGAGGACATTTGGAACAGAACGAACGGGTACAGGCAGAGCATCTGTTCTGACATCATGTACCAGACGTACAAGGCCGAACTGGCGGACACAACCCAGGCACAGGAAGAGGAATGCGACTCACAGGGTCAAGATGTGCTCTACAGGAAGCTAGTCACTGCCTCAGCACCCAACTTATTGGTTGCTGAGTTCAGGCTTCCCCCTTCAATACAGAACCTCCTTGGCTATGGTAAAGAGCAGAGTACTGGTGACAGAAACAGCCTGGGCAGTGGCAACAGGAAGTCGTGGGCCGCTTCCCCTAAGAAAGAACCGCCTAGCAAGCACATAGCGCTGGTTAATGAGACAGCTTCTGATCTCGTCAAACTGCCTGATATAGATGACCAGCAAAAGTATATCTACCAATatagagaggaggaggaggaggaggatgaggtgGAGGAGGATACAGGTTATCTAAAGGACCAGTCAGTGAGTCTACTGTCAGTGCATATGGGGGTACAGAGTCAAGGAAAGCAGCCAATGAGTTTGGGAAGTGTGGACTGTGACAGAACTGAGCAAGGACCCCTAGCCAATAGCAGAGGGCACTGCATGACTACGAGAAAGTCGGAATTGCAGTCAATGGAAGGAACTCTGGAGAAGAAACACAAGCTGCAACTGGGAGGGAAAAAGGTGAGAAAGGGTTTCACTGAGCCCACAGTTCAAAAAACAGGGGAGGGAGGCTgcACCATGCAGATCCTGGAACACATACCATACTGTGCTTTTCAAGCAAACACTGTGCTTTTACCAAGACAGGAAAGATACACTGAAGAGTACAGTGGCAGGGCTGCCTCTCAATTTGATTGGGGCCCAGTGTACCCCTGCTCCCGACTACACCAAAAAAGCAAACTGCTTTAGCTGCGTGATGGCTCTGAGTATCTCCTGAGTGCCTCTTCACGATTTCTAATGAAGAAATGGGTGCTGAAAATTCAAGCAAATACAGggCTGAGTGATAGTGAAATCTCAGGGCCCGTTTCTGGACACTGTATGCAGGACATCTCAGTGACCACAGAGCACAGTCCCTCTCACTCCTGCCACTGCAGCTCTTCCTGCCAGTGTCCTCAAGGGGGCGACACCACTTCCTGCCTCTCGGGGCACACTCCCGCCACAGCCTCTGTGAGAGCCAAAGAGATCATAGTGCTGACGAGGGACAACCTCCAACGGCAGCCGTGGCATCATGGGAATGTGAAGGAAAACTCCACTGCCATGTCTTTGGGTGCCGGTCATTGTGATTATTATGGCTCCCTGCGTCAGGCCATGAAGCAGAAACTCTCTCAGAAGGGCAGGGACTCCAGTTTCCAGCCTCAGGATTTCTTCCGCACAGAAGACCTGGACTGTGTGGCCAACAAACGCCGTTCACACTCCTTTACCTCAGCTACTTACCAGAAAATTACGCCCTTCTCATTGCCTCCTGGAGCCCGAGAGGGAGGGTCCAGTTATTCAGTGACTCTTTTCATTGGAGACCAACTGACAGAATCCCAGAGGGCTCAGGCCTTACCTCCTACGAACAACACagaatcagccaatcagaagcaGCTCCCACATATGATTGGCTGGCACCCAGAGACTCTCCTGGACACTCCAGGAGAGAGGAACTACGCCAGTCTTCCTAGACCAAGAAACAAATCAGTATTCAAAAAGTTTTTTGGAAAGAAAGAGTGAATCGGAGAGACTTTATGTGAATCGGAAACATGTGTTTTGGTTTATCTtggttttcatttagttttttacaaaAGGGTTAACCGagcatgtatttacatttaacaaaatcacAGCATAACTAATTTTCACTGTTCTCACTGATCCTCACTGTTCTACATGGAAGAATTCTTCACTGCAATAAAGTACAACAGATGCAGGAAAAGTAActtcatttcagtatttttatcAAATTTGCCTTAAAGTATAAATAGGTAAaggcacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccagtga

Function

GO:

id name namespace
GO:0003997 acyl-CoA oxidase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001381 True 7512 mRNA 0.49 32 605904 673225

Neighbor

gene id symbol gene type direction distance location
AMCG00001379 NA coding downstream 131491 464586 ~ 474413 (-)
AMCG00001382 sipa1l2,LOC107666899,LOC107719700,LOC107667119,LOC107728329 coding downstream 152770 448771 ~ 453134 (-)
AMCG00001380 NA coding downstream 178625 392584 ~ 427279 (-)
AMCG00001383 NA coding downstream 474475 127712 ~ 131429 (-)
AMCG00001384 NA coding downstream 493756 111534 ~ 112148 (-)
AMCG00001386 LOC108240633,LOC103371311,LOC101470936 coding upstream 372560 1045785 ~ 1046735 (-)
AMCG00001387 mrpl2,LOC106590008 coding upstream 864377 1537602 ~ 1555063 (-)
AMCG00001397 NA coding upstream 983023 1656248 ~ 1710333 (-)
AMCG00001398 NA coding upstream 1194103 1867328 ~ 1868100 (-)
AMCG00001408 dhx57,LOC106577153,LOC107081174,LOC107589582 coding upstream 1348734 2021959 ~ 2045438 (-)
G157197 NA non-coding downstream 17286 588404 ~ 588618 (-)
G157193 NA non-coding downstream 57208 548377 ~ 548696 (-)
G157162 NA non-coding downstream 316663 288538 ~ 289241 (-)
G157116 NA non-coding downstream 578688 26787 ~ 27216 (-)
G157114 NA non-coding downstream 580946 24707 ~ 24958 (-)
G157216 NA non-coding upstream 312 673537 ~ 674184 (-)
G157230 NA non-coding upstream 120858 794083 ~ 794323 (-)
G157243 NA non-coding upstream 258010 931235 ~ 931725 (-)
G157245 NA non-coding upstream 266014 939239 ~ 939490 (-)
G157250 LOC100846954 non-coding upstream 313097 986322 ~ 987040 (-)
AMCG00001385 NA other downstream 12437 474733 ~ 593467 (-)
G157339 NA other upstream 1076826 1750051 ~ 1788842 (-)
AMCG00001396 srsf7 other upstream 1329136 2002361 ~ 2019864 (-)
G157593 NA other upstream 2549452 3222677 ~ 3259955 (-)
G157671 NA other upstream 2816542 3489767 ~ 3492710 (-)
AMCG00001416 LOC107564242 other upstream 2845650 3518875 ~ 3521708 (-)

Expression


Co-expression Network