G157250 (LOC100846954)


Basic Information

Item Value
gene id G157250
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 986322 ~ 987040 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198044
tatatatatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaatgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgaccccttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagtttgCCACCAGGTTTGGcaaggagggattttgtcccactcctctttgcagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgatggtacatggcctcgtccatcgtccctttgatgcagtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcgtCCTCCAAAC

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198044 True 651 lncRNA 0.43 2 986322 987040

Neighbor

gene id symbol gene type direction distance location
AMCG00001381 NA coding downstream 313097 605904 ~ 673225 (-)
AMCG00001379 NA coding downstream 511909 464586 ~ 474413 (-)
AMCG00001382 sipa1l2,LOC107666899,LOC107719700,LOC107667119,LOC107728329 coding downstream 533188 448771 ~ 453134 (-)
AMCG00001380 NA coding downstream 559043 392584 ~ 427279 (-)
AMCG00001383 NA coding downstream 854893 127712 ~ 131429 (-)
AMCG00001386 LOC108240633,LOC103371311,LOC101470936 coding upstream 58745 1045785 ~ 1046735 (-)
AMCG00001387 mrpl2,LOC106590008 coding upstream 550562 1537602 ~ 1555063 (-)
AMCG00001397 NA coding upstream 669208 1656248 ~ 1710333 (-)
AMCG00001398 NA coding upstream 880288 1867328 ~ 1868100 (-)
AMCG00001408 dhx57,LOC106577153,LOC107081174,LOC107589582 coding upstream 1034919 2021959 ~ 2045438 (-)
G157245 NA non-coding downstream 46832 939239 ~ 939490 (-)
G157243 NA non-coding downstream 54597 931235 ~ 931725 (-)
G157230 NA non-coding downstream 191999 794083 ~ 794323 (-)
G157216 NA non-coding downstream 312138 673537 ~ 674184 (-)
G157197 NA non-coding downstream 397704 588404 ~ 588618 (-)
G157252 NA non-coding upstream 57342 1044382 ~ 1044856 (-)
G157257 NA non-coding upstream 114868 1101908 ~ 1104472 (-)
G157270 NA non-coding upstream 365957 1352997 ~ 1353226 (-)
G157303 NA non-coding upstream 622440 1609480 ~ 1658796 (-)
G157312 NA non-coding upstream 679588 1666628 ~ 1666921 (-)
AMCG00001385 NA other downstream 392855 474733 ~ 593467 (-)
G157339 NA other upstream 763011 1750051 ~ 1788842 (-)
AMCG00001396 srsf7 other upstream 1015321 2002361 ~ 2019864 (-)
G157593 NA other upstream 2235637 3222677 ~ 3259955 (-)
G157671 NA other upstream 2502727 3489767 ~ 3492710 (-)
AMCG00001416 LOC107564242 other upstream 2531835 3518875 ~ 3521708 (-)

Expression


Co-expression Network