RNA id: TU198155


Basic Information

Item Value
RNA id TU198155
length 2038
RNA type TUCP
GC content 0.41
exon number 2
gene id G157339
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 1750051 ~ 1788842 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATGGCTTCTTCGTACACTGAATGatgacTCCAGACTGTGATTGGTTCACCTGGGTTCATTGAGTGTATGCTGAGGGTTCTTGGGCAGAAGGCAGTGGATGATCCAGGGACCTACGGAAATGAATGCCTGATGTTGGATGGTATGaccattagaaaacagatatgATGATGGATTGTTGCAACGAATGACAGGATTTGGGAGACAACATGGAGACTtgcagtgcctatagaaagtctaatCACCCTTTCAAATTGTTCACCTTTGTTGCCTTATagtcagaaattaaaatgcattgaaatattatgtatataccccacaactttgaaaaaaaagataacagaaatacatcaaaaatcttacataaaaactgaaatagctggGTTGGGAAAGTGTCCACCACCCTTGTAATATCGAGGGTGTAAGCAAGGGTGTATCTATTTCACGTGTAAGCAATCacattcaaaatcacacaccaagttaaagggcctccacctgtgttaaattgtagtgattcacaaggtttcaggataaattcatcAGCttctgtaggttccctctgctgggaagtgcatttcaaagcaaagactcaaccatgagcaccaggGAGCTTTCTAAAGAACtccgggacaaagttgttgaaaggcacagatcaggggctGGGTATAAAAGAATATCGAAGGCCTTggatatcccttggagcacagtcaagacaattattaagaagtggaaggtgtatggcaccaccaacaCCTTGCCTAGGTCAgaccgtccctccaaactggatgaccaagcaaAAAGGAGACTGAGCACAAGGGAGCTTTCAGAAGATCtccgggacaaagttgttgaaaggcacagatcaggggctgggtataaaaatatatcaaaggccttgaatatacCTTTGAGTACtgttaaaacaattattaagaagtggaaggtgtatggcaccaccaagaccttgcctagatcaggccgtcctgccaaactggatgaccgagcaagaaggagactgttcagagaggctaccaaaaggccaatggcaactttgcaggatctacaggcttttatggccaagactggtcaaagtgtacatgtgacaacaatatcccgagcactccacaaatctggcatGTATCAGCAGAGGTGtcatttgcttaattgaatccttaattgcaCTAACAATTCAATGTAAGATCATTAACAGCTCAATTGGACCAAACAAAAAGTCCTCACATGGTTtattgtatataaacatttattgtagATACTAGACTATTGAAAGTAGTGCCCAGAGTTTTTCACCACCTGCCATTATTATTCCTATGGGAAATAGTGGGAAAACTCAGAGCCCAAATTATAAGTGCTGTCTTAAACATGTTGTGAAGCatgttgaaagaaaacaaattctgtTTCTGGGAAACTATGCCAGCAGTTTGAACAGTATTAGCTCAatcacaaaaatacatgttcaaGAAACGGCCTCAAGAAAATGTCTCAGTACTTTGTTAAATTGGTGTCTGCTAGTTTTTATTTGCTCTGAGGTTCACAACCCCATCATGCATGCACAAGAATCCCATAGTCCAGTCACACACCACGTGTGGCACCATCAGTCCACTTGTCAGTGTGCATCACAGAACAGCAGGCTGTAAAAAAGTTCACAGACAAATCTCAGCTCTGTACAGTGACAGCTGTACATAACTGGCATTGTCATCAGTGCTCTGTGTCCTGGGAGGTCCTGATTGCCTTTAATCACTCTCACTTGTTCAACTGTTTAAACACGtttcaacaaaataaagatgaaaatgaacaaaacatctATTTCTCATAGTGTAGTTTCCTTTTGCGTGCATTGCTGAGCTTCTCTGTGATTGTGATTCTCTGTGACCTTTATGGAAACTGACTTCTTACCACAactgtaaagaaagaaatagaataCTCAAGACTGAATATAGCAATATGCAACTAAAGAAATATTATATGCACACAATTGTTTGTTGATCATGCATCCCCAACTTGTAACGTAAATCGCCACA

Function

GO:

id name namespace
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198144 lncRNA downstream 14307 1748546 ~ 1748862 (-) True G157329
TU198140 lncRNA downstream 65107 1697837 ~ 1698062 (-) True G157326
TU198118 lncRNA downstream 96248 1666628 ~ 1666921 (-) True G157312
TU198109 lncRNA downstream 104373 1609480 ~ 1658796 (-) True G157303
TU198067 lncRNA downstream 409943 1352997 ~ 1353226 (-) True G157270
TU198173 lncRNA upstream 35355 1824197 ~ 1825624 (-) True G157353
TU198180 lncRNA upstream 64171 1853013 ~ 1853289 (-) True G157358
TU198185 lncRNA upstream 118717 1907559 ~ 1907763 (-) True G157362
TU198225 lncRNA upstream 215289 2004131 ~ 2019864 (-) False AMCG00001396
TU198314 lncRNA upstream 630686 2419528 ~ 2419741 (-) True G157463
AMCG00001397 mRNA downstream 52836 1656248 ~ 1710333 (-) True AMCG00001397
AMCG00001387 mRNA downstream 208106 1537602 ~ 1555063 (-) True AMCG00001387
AMCG00001386 mRNA downstream 716434 1045785 ~ 1046735 (-) True AMCG00001386
AMCG00001381 mRNA downstream 1089944 605904 ~ 673225 (-) True AMCG00001381
AMCG00001385 mRNA downstream 1169702 474733 ~ 593467 (-) False AMCG00001385
AMCG00001398 mRNA upstream 78486 1867328 ~ 1868100 (-) True AMCG00001398
AMCG00001396 mRNA upstream 213519 2002361 ~ 2019805 (-) True AMCG00001396
AMCG00001408 mRNA upstream 233117 2021959 ~ 2045438 (-) True AMCG00001408
AMCG00001409 mRNA upstream 321574 2110416 ~ 2167344 (-) True AMCG00001409
AMCG00001402 mRNA upstream 432325 2221167 ~ 2251759 (-) True AMCG00001402
TU198465 other upstream 1433835 3222677 ~ 3259955 (-) True G157593
TU198559 other upstream 1700925 3489767 ~ 3492710 (-) True G157671
TU199110 other upstream 3588588 5377430 ~ 5379959 (-) False G158123
TU199111 other upstream 3588588 5377430 ~ 5418243 (-) True G158123
TU199135 other upstream 3654015 5442857 ~ 5443581 (-) False AMCG00001483

Expression Profile