RNA id: AMCG00001397


Basic Information

Item Value
RNA id AMCG00001397
length 651
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00001397
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 1656248 ~ 1710333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGTCGGTGAGACTGCCCTCCCCCTCACTTCGGCACGGTACCGCCGCGGTCAGAAATACTCTCACCGCCCACACTCTCCTGTACCTGGACCTCCAGACCCTCACTCTCTTCAACAGTCTCCCCCGCAGCCCCTCTTCTCGCCTCCTCTGCCACTTCGGCTGTTCCGCTAaagatgatgatgatgaagaagaatTTGAGGAACTTGAGGATGAGCTTGAACTTACTTCAGAAgATGAGCCAGACAATGTTGCAAACCTTTGGAACAGTCATCAAATTCGTCCCAGCCGCAACCAAACAGCACCAAACGACCGCCCTGTGACCATGTACAACCTGTCACATCTATATGGTGCTGGCTGTGTCAGGAAGAATGCATCCAAAAGGGTCCTTATCCATGACCACAGAGAGCTACAGACAAACTTGCTTGGGAGCTGGAAGAGGCCCAGTAGGGTGCTCTCAGAGCAACCCCTCTCTTCTGAGGAGGAGCTGCTGTCGTCAGAGAAAACTTTGGATCTGGGGAGCCTGGGTTTCTtagtgggaggaggaggaggaggaggaggagtgcaCTTCACAGGGGTGACAGCACTGCTGTTCATGCCAGTCGAGCCCTCAATGTGGCAAATCACTGTGGAGAAAATGAGGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198067 lncRNA downstream 303022 1352997 ~ 1353226 (-) True G157270
TU198054 lncRNA downstream 551776 1101908 ~ 1104472 (-) True G157257
TU198046 lncRNA downstream 611392 1044382 ~ 1044856 (-) True G157252
TU198044 lncRNA downstream 669208 986322 ~ 987040 (-) True G157250
TU198039 lncRNA downstream 716758 939239 ~ 939490 (-) True G157245
TU198144 lncRNA upstream 38213 1748546 ~ 1748862 (-) True G157329
TU198173 lncRNA upstream 113864 1824197 ~ 1825624 (-) True G157353
TU198180 lncRNA upstream 142680 1853013 ~ 1853289 (-) True G157358
TU198185 lncRNA upstream 197226 1907559 ~ 1907763 (-) True G157362
TU198225 lncRNA upstream 293798 2004131 ~ 2019864 (-) False AMCG00001396
AMCG00001387 mRNA downstream 101185 1537602 ~ 1555063 (-) True AMCG00001387
AMCG00001386 mRNA downstream 609513 1045785 ~ 1046735 (-) True AMCG00001386
AMCG00001381 mRNA downstream 983023 605904 ~ 673225 (-) True AMCG00001381
AMCG00001385 mRNA downstream 1062781 474733 ~ 593467 (-) False AMCG00001385
AMCG00001379 mRNA downstream 1181835 464586 ~ 474413 (-) True AMCG00001379
AMCG00001398 mRNA upstream 156995 1867328 ~ 1868100 (-) True AMCG00001398
AMCG00001396 mRNA upstream 292028 2002361 ~ 2019805 (-) True AMCG00001396
AMCG00001408 mRNA upstream 311626 2021959 ~ 2045438 (-) True AMCG00001408
AMCG00001409 mRNA upstream 400083 2110416 ~ 2167344 (-) True AMCG00001409
AMCG00001402 mRNA upstream 510834 2221167 ~ 2251759 (-) True AMCG00001402
TU198157 other upstream 39718 1750051 ~ 1788842 (-) False G157339
TU198155 other upstream 52836 1763169 ~ 1788842 (-) True G157339
TU198465 other upstream 1512344 3222677 ~ 3259955 (-) True G157593
TU198559 other upstream 1779434 3489767 ~ 3492710 (-) True G157671
TU199110 other upstream 3667097 5377430 ~ 5379959 (-) False G158123

Expression Profile