RNA id: AMCG00001386


Basic Information

Item Value
RNA id AMCG00001386
length 951
RNA type mRNA
GC content 0.48
exon number 1
gene id AMCG00001386
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 1045785 ~ 1046735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTACCACCTCCGCCAGCTAATAAGCCACATGTGTGCCTGTCCACAATTCTCATCATGAGCAGCATGGCACTGATGGATGCTTATCTGGTGGAGCAGAACCAAGGGCCGCGGAAGATTGGCATCTGCATTATGGTGATGGTGGGGGACATCTGTTTCTTGATCATACTGCGCTATGTGGCAGTGTGGGTGGGGGCAGAGGTCAGGACTGCCAAGAGAGGCTATGCTATGATATTGTGgttcctttacatttttgtccTGGAGATTAAGGTGTACTTCATCTACCAGAACTACAAAGCAGACAGGAAGAGCCTGGACACCATTGCGAGGAAAGCCCTAACACTGCTTCTGTCAATTTGCATGCCAGCCCTCTACATCCTCCTGGTGGCCATCGACCACATGGAATATGTGCGCCCCTTCAAGAAGAAGGAGGAAATACGGAACCGTCTCTTTTGGGTAGTGGTAGACCTCCTGGATATTTTGGATATACAAGCCAATTTGTGGGAGCCTCAAAAAAAGGGACTGCCTCTTTGGGCAGAAGGGCTGATGTTCTTTTACTGCTATATTTTGCTGCTGATCCTGCCCTGTGTCTCCTTAAGCGAAATTAGCATGCAAGGGATTAACATAGTACCCCACAAAATGATGCTCTACCCTATACTGAGCCTGGTCACTATAAACATCATCACCATCTTTATCAGAGGGAGTAACATGGTCTTTTATCGGGACGTGAGGGTTTCAGGGATTTTAATGGGAAAAAATGTCTTGGCCATCATCCTAAAGACCTGTAGCTTTGTGCAGTACAGGAAACAGTTGCAAAGTGCCCCACCTGGTTTTGGAATTGAACTCCAGAAGAATTCCATTCCTCACAGCCAGTCTCTACCAACACCTCCACAAGTGGTGATACAAAATCAGACCGCTTTGCCAGAGGTCACTGGGTGTGAACACACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198046 lncRNA downstream 929 1044382 ~ 1044856 (-) True G157252
TU198044 lncRNA downstream 58745 986322 ~ 987040 (-) True G157250
TU198039 lncRNA downstream 106295 939239 ~ 939490 (-) True G157245
TU198037 lncRNA downstream 114060 931235 ~ 931725 (-) True G157243
TU198024 lncRNA downstream 251462 794083 ~ 794323 (-) True G157230
TU198054 lncRNA upstream 55173 1101908 ~ 1104472 (-) True G157257
TU198067 lncRNA upstream 306262 1352997 ~ 1353226 (-) True G157270
TU198109 lncRNA upstream 562745 1609480 ~ 1658796 (-) True G157303
TU198118 lncRNA upstream 619893 1666628 ~ 1666921 (-) True G157312
TU198140 lncRNA upstream 651102 1697837 ~ 1698062 (-) True G157326
AMCG00001381 mRNA downstream 372560 605904 ~ 673225 (-) True AMCG00001381
AMCG00001385 mRNA downstream 452318 474733 ~ 593467 (-) False AMCG00001385
AMCG00001379 mRNA downstream 571372 464586 ~ 474413 (-) True AMCG00001379
AMCG00001382 mRNA downstream 592651 448771 ~ 453134 (-) True AMCG00001382
AMCG00001380 mRNA downstream 618506 392584 ~ 427279 (-) True AMCG00001380
AMCG00001387 mRNA upstream 490867 1537602 ~ 1555063 (-) True AMCG00001387
AMCG00001397 mRNA upstream 609513 1656248 ~ 1710333 (-) True AMCG00001397
AMCG00001398 mRNA upstream 820593 1867328 ~ 1868100 (-) True AMCG00001398
AMCG00001396 mRNA upstream 955626 2002361 ~ 2019805 (-) True AMCG00001396
AMCG00001408 mRNA upstream 975224 2021959 ~ 2045438 (-) True AMCG00001408
TU198157 other upstream 703316 1750051 ~ 1788842 (-) False G157339
TU198155 other upstream 716434 1763169 ~ 1788842 (-) True G157339
TU198465 other upstream 2175942 3222677 ~ 3259955 (-) True G157593
TU198559 other upstream 2443032 3489767 ~ 3492710 (-) True G157671
TU199110 other upstream 4330695 5377430 ~ 5379959 (-) False G158123

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_03356017_03358437.mRNA True 2518 mRNA 0.44 2 CI01180000 3354635 ~ 3358437 (-)