RNA id: AMCG00001382


Basic Information

Item Value
RNA id AMCG00001382
length 945
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00001382
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 448771 ~ 453134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGCTTCCAGCACAAGGTGGGTATCCTGTACTGCAAGGCTGGCCAGAGCACGGAGGAGGAGATGTACAATAACGAGAGCGCAGGGCCTGTTTTTGAGGAGTTCCTTGACCTACTGGGGCAAAGAGTGAGGTTGAAGGGCTTCACCAAGTACAGAGCACAGCTGGACAATAAGACGGATTCCACTGGAACTCACTCCCTTTACACCACCTATAAGGATTATGAATTAATGTTCCATGTGTCCACATTACTGCCCTACACGCCCAACAACAGACAGCAGCTCTTGAGGAAAAGGCACATAGGAAATGACATCGTCACAATCGTCTTTCAAGAGCCCGGCGCCCTTCCCTTCACTCCGAAAAACATTCGCTCCCACTTTCAGCATGTGTTCGTCATTGTCAAAGTCCACAACCCTTGCACTGAAAATGTATGCTACAGTGTGGCCGTGTCGAGATCTAAAGATGTGCCTCCTTTCGGTCCACCTATCCCCAAAGGAGTGACTTTCCCCAAGTCTGCTGTTTTCAGGGACTTTCTCCTGGCGAAGgtcatcaatgcagaaaacgctGCCCACAAATCAGAGAAGTTCCGGGCCATGGCGACCAGGACAAGGCAGGAGTACCTGAAGGACCTGGCAGAGAACTTTGTGACCACAGCCACCGTGGACTCCACCGTGAAGTTCAGCTTCATCACACTGGGGGccaagaagaaggagaaaaccAAACCCAGGAAGGACGCCCACCTCTACAGCATCGGCGCCATCACGTGGAATGTCATTGCTCGGGACTTCGGGCAGTCGGCCGACATTGAATGTCTGCTTGGTATCTCCAATGAGTTCATCATGCTTATCGAGGAGGAGTCCAAGAACGTGGTCTTCAACTGCTCCTGCCGGGACGTGATCGGCTGGACATCTGGAGTTATGAGCATCAAAATCTTCTACGAACGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197925 lncRNA downstream 159530 288538 ~ 289241 (-) True G157162
TU197871 lncRNA downstream 421555 26787 ~ 27216 (-) True G157116
TU197869 lncRNA downstream 423813 24707 ~ 24958 (-) True G157114
TU197866 lncRNA downstream 433396 12811 ~ 15375 (-) True G157111
TU197954 lncRNA upstream 73733 526867 ~ 531220 (-) True AMCG00001385
TU197967 lncRNA upstream 95243 548377 ~ 548696 (-) True G157193
TU197971 lncRNA upstream 135270 588404 ~ 588618 (-) True G157197
TU198005 lncRNA upstream 220403 673537 ~ 674184 (-) True G157216
TU198024 lncRNA upstream 340949 794083 ~ 794323 (-) True G157230
AMCG00001380 mRNA downstream 21492 392584 ~ 427279 (-) True AMCG00001380
AMCG00001383 mRNA downstream 317342 127712 ~ 131429 (-) True AMCG00001383
AMCG00001384 mRNA downstream 336623 111534 ~ 112148 (-) True AMCG00001384
AMCG00001379 mRNA upstream 11452 464586 ~ 474413 (-) True AMCG00001379
AMCG00001385 mRNA upstream 21599 474733 ~ 593467 (-) False AMCG00001385
AMCG00001381 mRNA upstream 152770 605904 ~ 673225 (-) True AMCG00001381
AMCG00001386 mRNA upstream 592651 1045785 ~ 1046735 (-) True AMCG00001386
AMCG00001387 mRNA upstream 1084468 1537602 ~ 1555063 (-) True AMCG00001387
TU198157 other upstream 1296917 1750051 ~ 1788842 (-) False G157339
TU198155 other upstream 1310035 1763169 ~ 1788842 (-) True G157339
TU198465 other upstream 2769543 3222677 ~ 3259955 (-) True G157593
TU198559 other upstream 3036633 3489767 ~ 3492710 (-) True G157671
TU199110 other upstream 4924296 5377430 ~ 5379959 (-) False G158123

Expression Profile