RNA id: TU199110


Basic Information

Item Value
RNA id TU199110
length 503
RNA type TUCP
GC content 0.44
exon number 4
gene id G158123
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5377430 ~ 5418243 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTGAAGGACGGCAGAGCACACAGGATACAGCAGGCTTACACTACAGCACAAAACATGAGTAGCccacttgaaaaacaaatgcagaggaTAATGGAAGAAGCCAAAAACATGACAGAGAAAGACAAGCTCTACATGTACAAAGGAGTATTATATCCCACCATTGTGTGTAAACCAGAGAATTTCAAAGCAATGGAGAATTTTGAGGCTAGGGAAGATGACATAATGCTAGCAGCCTATCCAAAATGTGGGTTTAACTGGATGGTTGGGATGATACGTAAAATTGCAGACATCCCAGAGAAGCGGCCTCCCATTCCTCCCTTGCTGGAATTCAGTAATCCAGAAAAATACCAGtttataaaTGAGGCTCCTTCTCCAAGACTTCTAGGGACACACATGCACCCTGACAACATACCGGCTTCCATTgctgagaagaaaacaaagATTCTTGTGGTGTTGCGCAACCCTAAAGACACTGTGGTCTCTTTCTTCCACTTCACCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198989 lncRNA downstream 442557 4914789 ~ 4934873 (-) True G158017
TU198919 lncRNA downstream 725424 4651338 ~ 4652006 (-) True G157970
TU198846 lncRNA downstream 1107570 4263926 ~ 4269860 (-) True G157911
TU198775 lncRNA downstream 1223982 4095235 ~ 4153448 (-) True G157850
TU198698 lncRNA downstream 1460344 3881840 ~ 3917086 (-) False G157789
TU199216 lncRNA upstream 279805 5659764 ~ 5661214 (-) False AMCG00001487
TU199226 lncRNA upstream 447537 5827496 ~ 5827789 (-) True G158222
TU199242 lncRNA upstream 524591 5904550 ~ 5909009 (-) True G158238
TU199249 lncRNA upstream 537841 5917800 ~ 5919711 (-) True G158245
TU199251 lncRNA upstream 540757 5920716 ~ 5921922 (-) True G158247
AMCG00001482 mRNA downstream 58520 5314695 ~ 5318910 (-) True AMCG00001482
AMCG00001472 mRNA downstream 143371 5228893 ~ 5234059 (-) True AMCG00001472
AMCG00001471 mRNA downstream 179698 5189982 ~ 5197732 (-) True AMCG00001471
AMCG00001474 mRNA downstream 224317 5152766 ~ 5153113 (-) True AMCG00001474
AMCG00001473 mRNA downstream 256556 5082622 ~ 5120874 (-) True AMCG00001473
AMCG00001485 mRNA upstream 37536 5417495 ~ 5418131 (-) True AMCG00001485
AMCG00001484 mRNA upstream 39506 5419465 ~ 5425661 (-) True AMCG00001484
AMCG00001483 mRNA upstream 61668 5441627 ~ 5443376 (-) True AMCG00001483
AMCG00001487 mRNA upstream 278003 5657962 ~ 5746325 (-) True AMCG00001487
AMCG00001490 mRNA upstream 375076 5755035 ~ 5800959 (-) True AMCG00001490
TU198559 other downstream 1884720 3489767 ~ 3492710 (-) True G157671
TU198465 other downstream 2117475 3222677 ~ 3259955 (-) True G157593
TU198157 other downstream 3588588 1750051 ~ 1788842 (-) False G157339
TU199135 other upstream 62898 5442857 ~ 5443581 (-) False AMCG00001483
TU199208 other upstream 215425 5595384 ~ 5597839 (-) True G158207
TU199232 other upstream 500225 5880184 ~ 5880655 (-) False AMCG00001491
TU199388 other upstream 1127980 6507939 ~ 6509683 (-) False AMCG00001514
TU199465 other upstream 1395648 6775607 ~ 6776658 (-) False G158434

Expression Profile