RNA id: TU198775


Basic Information

Item Value
RNA id TU198775
length 728
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G157850
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4095235 ~ 4153448 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaggaaaaaaaaaaaagaaaaaggaatgcaTCAGAAACATTGTGGTTTTCTGTgaagtgtattttaaatcacttgATTTGCTAGAAAAGCCTTCATCCAACCTAGCACACAAAGCATAACTTTACATGAAAAAGTACAAATAGTGAAAAGTGTGAATGAACCATGTCCTGGCTTATAAAAGCAGAAGAGACCATTCAGATCTGAATCACACTGTACTCAAATCCAGCATTAATGTACTCTCATATATACTTTATACAATAATTTATCACAGAAGGCAAAGTATATTGCATATAAAGCTTTTCTTATGGATACAGTTATGCTACATTCATAtccttataaaaacaacaacaataataacaatacatacattaagaAATACTTTGTACTATATAGCAATATGAAGTATGCAATCtacttcatttcattttttcactgCCTGTACATTTGGttaattttcaatacatttgagaGAATATAAACCTTTGATCCATACATGGAAGCAATGCATacgtatattatatatataataatacagttcattGAAGTGATTTGAAAATCCctttttcaataattaaaaaaaaaaaaaactatatgcTGTCAAAGGTTGGGTTCTGGAAGCCTGGAGACAAAGGATTGTCAGGATCCTCTCCACACTCGTCCAAACTGCAGCCGTTATCCTCAGGGCCCAGATCGGCCTCAAATATCCTCTGTAACAGGGTATCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198698 lncRNA downstream 178149 3881840 ~ 3917086 (-) False G157789
TU198699 lncRNA downstream 178149 3886799 ~ 3917086 (-) True G157789
TU198712 lncRNA downstream 179100 3914113 ~ 3916135 (-) False G157798
TU198713 lncRNA downstream 179100 3914113 ~ 3916135 (-) True G157798
TU198705 lncRNA downstream 193917 3894743 ~ 3901318 (-) True G157792
TU198846 lncRNA upstream 110478 4263926 ~ 4269860 (-) True G157911
TU198919 lncRNA upstream 497890 4651338 ~ 4652006 (-) True G157970
TU198989 lncRNA upstream 761341 4914789 ~ 4934873 (-) True G158017
TU199216 lncRNA upstream 1506316 5659764 ~ 5661214 (-) False AMCG00001487
TU199226 lncRNA upstream 1674048 5827496 ~ 5827789 (-) True G158222
AMCG00001426 mRNA downstream 206820 3874038 ~ 3888415 (-) False AMCG00001426
AMCG00001425 mRNA downstream 252604 3825451 ~ 3842631 (-) True AMCG00001425
AMCG00001424 mRNA downstream 293750 3779562 ~ 3801485 (-) True AMCG00001424
AMCG00001423 mRNA downstream 495778 3589190 ~ 3599457 (-) True AMCG00001423
AMCG00001416 mRNA downstream 574963 3518875 ~ 3520272 (-) False AMCG00001416
AMCG00001442 mRNA upstream 50483 4203931 ~ 4226910 (-) True AMCG00001442
AMCG00001449 mRNA upstream 217077 4370525 ~ 4371684 (-) True AMCG00001449
AMCG00001444 mRNA upstream 262065 4415513 ~ 4436845 (-) True AMCG00001444
AMCG00001443 mRNA upstream 317633 4471081 ~ 4484279 (-) True AMCG00001443
AMCG00001454 mRNA upstream 361936 4515384 ~ 4516307 (-) True AMCG00001454
TU198559 other downstream 602525 3489767 ~ 3492710 (-) True G157671
TU198465 other downstream 835280 3222677 ~ 3259955 (-) True G157593
TU198157 other downstream 2306393 1750051 ~ 1788842 (-) False G157339
TU199110 other upstream 1223982 5377430 ~ 5379959 (-) False G158123
TU199111 other upstream 1223982 5377430 ~ 5418243 (-) True G158123
TU199135 other upstream 1289409 5442857 ~ 5443581 (-) False AMCG00001483
TU199208 other upstream 1441936 5595384 ~ 5597839 (-) True G158207
TU199232 other upstream 1726736 5880184 ~ 5880655 (-) False AMCG00001491

Expression Profile