RNA id: TU198989


Basic Information

Item Value
RNA id TU198989
length 849
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G158017
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4914789 ~ 4934873 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAATGGGTGTCCATCATCGGACTTCTGCACCGCCTGCAAGACGCCCTTATATATCCTGAAGGTGATGGTGACAGACAGCAGGGCCAGGGCCATGTAGGAGCACACGCTCACGATGCTGCACACCGTGAGGGACAGGAGCAGGAACAGGCTGGCCCCGAAAACCACGCCCGTCTTCTTGATGTCGCGCCAGTACAGGAGTGCTCACATGGTGATGACGAACCCGGGGGAGACGCCTCCTTCGCTGGGCTCCTTGGGGCCGCCTTGGGTGTTTCTGGCTTAAGGATCTTGTCTTCCACCTCCCCCGCCTTTGTCTTCGTCTCCGCCGGCTCCGCGAAGGGCGGCTTCAGCGGCTCCTTGAGCTTGTTGCTGGAGGGATCCAGGCTAAAAGAAGAGGGAGAGTCCGACCAGATGTCTGGGACGGGGTCCTCCCGTTTGCGAGAGTAAAAATCATCCATCGGGGGTCCGCCGGTTAAGTCCAAGATATCATCCTCTGGCACTTTTCTAGGCTCGGCTTCGTTGTTCTCCCCCAGCAGATACCCGGCCGCCTCCTCGAACAGCTGGTTCCGATCCCTCTGCTCGTAGTCTTCTTGATGCTCGTCCGAGCGGGCGGTCGTGGAGGATATATGCGCGTCTTCCATGTCTTTGCTTCTTGGTTTTGGAGCAGCTTTTCTTGGTTATTTTATACCCCAAATCCCCGCCACCTTTCCTGGAAAAGTCGACCTTAAGTTTGGCTGAGCGTCTGGGTGCCGtagggctgggctgggctgagcTGAACAAGTACGCCACACCGACCCGGCGCTGGAGAAGAACGGCAGGCAGTCGCTCGCACACTGTGCCACACTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198919 lncRNA downstream 262783 4651338 ~ 4652006 (-) True G157970
TU198846 lncRNA downstream 644929 4263926 ~ 4269860 (-) True G157911
TU198775 lncRNA downstream 761341 4095235 ~ 4153448 (-) True G157850
TU198712 lncRNA downstream 998654 3914113 ~ 3916135 (-) False G157798
TU198713 lncRNA downstream 998654 3914113 ~ 3916135 (-) True G157798
TU199216 lncRNA upstream 724891 5659764 ~ 5661214 (-) False AMCG00001487
TU199226 lncRNA upstream 892623 5827496 ~ 5827789 (-) True G158222
TU199242 lncRNA upstream 969677 5904550 ~ 5909009 (-) True G158238
TU199249 lncRNA upstream 982927 5917800 ~ 5919711 (-) True G158245
TU199251 lncRNA upstream 985843 5920716 ~ 5921922 (-) True G158247
AMCG00001464 mRNA downstream 39604 4872756 ~ 4875185 (-) True AMCG00001464
AMCG00001465 mRNA downstream 57726 4851232 ~ 4857063 (-) True AMCG00001465
AMCG00001456 mRNA downstream 184021 4722818 ~ 4730768 (-) True AMCG00001456
AMCG00001458 mRNA downstream 293640 4594336 ~ 4621149 (-) True AMCG00001458
AMCG00001455 mRNA downstream 363605 4522509 ~ 4551184 (-) True AMCG00001455
AMCG00001466 mRNA upstream 8716 4943589 ~ 4955143 (-) True AMCG00001466
AMCG00001467 mRNA upstream 32734 4967607 ~ 4997395 (-) True AMCG00001467
AMCG00001468 mRNA upstream 76071 5010944 ~ 5015498 (-) True AMCG00001468
AMCG00001469 mRNA upstream 105338 5040211 ~ 5068162 (-) True AMCG00001469
AMCG00001473 mRNA upstream 147749 5082622 ~ 5120874 (-) True AMCG00001473
TU198559 other downstream 1422079 3489767 ~ 3492710 (-) True G157671
TU198465 other downstream 1654834 3222677 ~ 3259955 (-) True G157593
TU198157 other downstream 3125947 1750051 ~ 1788842 (-) False G157339
TU199110 other upstream 442557 5377430 ~ 5379959 (-) False G158123
TU199111 other upstream 442557 5377430 ~ 5418243 (-) True G158123
TU199135 other upstream 507984 5442857 ~ 5443581 (-) False AMCG00001483
TU199208 other upstream 660511 5595384 ~ 5597839 (-) True G158207
TU199232 other upstream 945311 5880184 ~ 5880655 (-) False AMCG00001491

Expression Profile