AMCG00001455 (mark1,LOC108411950,LOC106585018)


Basic Information

Item Value
gene id AMCG00001455
gene name mark1,LOC108411950,LOC106585018
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4522509 ~ 4551184 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001455
acagcTCTTTCGGGAAGTACGAATAATGAAGATCTTGAATCACCCTAATATAGttaaattatttgaagTAATTGAAACGGAGAAGACGCTTTATTTAGTCATGGAGTACGCCAGCGGAGGAGAGGTGTTTGACTACCTAGTTGCACATGGGAGGATGAAAGAAAAAGAGGCCAGAGCGAAATTTCGACAGATTGTCTCTGCTGTCCAGTATTGTCATCAAAAGAGGATTGTTCACAGGGACCTCAAGGCAGAAAACTTGTTGCTGGACGCCgacatgaatattaaaatagcCGACTTTGGTTTTAGCAACGAGTTTATGATCGGTAACAAACTGGACACGTTCTGTGGCAGCCCGCCCTATGCCGCCCCCGAGCTGTTCCAGGGCAAGAAATATGATGGGCCGGAGGTGGATGTTTGGAGCCTGGGGGTCATCCTCTATACACTGGTCAGCGGCTCCCTGCCCTTCGATGGCCAGAACCTGAAGGAGCTGAGGGAGAGGGTGTTGAGAGGGAAGTATCGAATCCCTTTCTACATGTCCACAGACTGTGAAAACCTACTAAAGAAACTGCTGGTCCTCAATCCTGTCAAACGAGGCAGCCTGGAGCAAATTATGAAGGACCGGTGGATGAATGTCGGCTACGAAGAAGAGGAGCTGAAGCCCTACATCGAGCCAGAACCTGATTTCAGCGACACCAAAAGGATAGaGTTAATGGTGACCATGGGCTTCTCCAGAGACGAAATTACGGAGTCTTTAATTGGACAGAAGTACGATGAAGTCATGGCCACTTACCTTCTACTGGGCAGAAAACCCCCAGAGTTTGAAGGAAGCGAGTCCCTGTCCAACAGTAACCTGTGTCAAAGGTCACGACCCAGCAGCGACCTCAACAACAGCTCCACGCAGTCCCCGGCCCACTCCAAGGTCCAGCGCAGCATATCGGCCAACCAGAAGCAGCGGCGGTTCAGTGATCATGGTGGGGATGACATTCAACCAACCGGCCCCACCATCCCTCCGGCTGTGTCCTACACCAAGCGCGCCCAGGCCAACAGCGTGGAGAGCGACCAGAAAGAGGACTGGGACACCGCACGCAAGCTGGGCACCACCAGCTCCAAAGGAGACATGCCCACCAGCCCACTCGTAGTCCCAGAGAGGAAGAAGTCGGCCACAGCGCCTGGGAATAACGTGTTGCCGGGGGGAGGAATGACCCGGAGAAACACGTACGTGTGCGAGCGCTCCAGCACCGACCGCTACTCCGCCATACCCAACGGCAAAGACAGCAGCCTGACTGAAATGTCCGCCTGTGCTAGCAGCACTCCCTCGTCGGCAGCGGCAACCTCCGCGGTGCCCTCCACCCGGCCACGCCACGTCAAGTCCATGTCGGCTTCGGGACACCCTATCAAGGTCACGCTGCCGCCCATCGAGGACGGCACTGAGCCCTACAGACCCGGCTCAACTGGCTCCCGTGCCCCGGCCGCGTCCCCATCAGCCCACAGCATCAGCAGCACCACGCCGGACCGGACGCGGTTCCCCCGCGGCAGCTCCAGCCGTAGCACCTTTCACGGGGCGCAGCTCCGCGACCGCCGCAACGCCACCTACAACGGCCCGCCCGCCTCGCCCACCCTCTCGCATGACACCGCCGCCCTGGCCCAGGCCCGCCGTGGCACCTCCACTGGCATCATCAGCAAGATCACCTCCAAATTCGTCCGCAGGAGCACCTCGGGGGAGCCAAAAGAGAGGGACAAGGACGACGGCAAGGACTCCAAGCCGAGGTCCCTGCGCTTCACCTGGAGCATGAAGACCACCAGCTCCATGGACCCCAACGACATGATGAGGGAGATCCGCAAAGTGCTGGACGCCAACAACTGCGACTACGAGCAGCGTGAGCGCTTCCTGCTCTTCTGCGTCCACGGTGACGCTCGGCAGGACAACCTGGTGCAGTGGGAGATGGAGGTGTGCAAGCTGCCGCGGCTCTCCCTCAACGGCGTACGCTTCAAGAGGATCTCGGGCACCTCCATCGCCTTCAAGAACATTGCCTCCAAAATCGCCAACGAGCTGAAGCTGTGAAAAGCGAGGAGGGGGggaataacacaaaacaaagaatggAATTTAAAAAGGAGCAAAACCCAAAAGACTGCTTTCATTCATGGGATCAGGGTAGACTCAGGAGCGGTGTACAGTGATCACCTTGTCGAATGTACTGGTATTTGAGGCTACTGTTGAGTGTTTGGCCAgtggaaacagaaaaacaattcaaagagaaatcaaatataatatacCACCCCACCCTTCAACAACAACCCTGCCCCATGCAACTACACCCACCACCATATACAATAAATGGTTAAAAACAATGACCCTTATTGCAATAAAGTTCAGCCTTTCTAATTAATGACGTGCAAAACTCAGCGCTATATGCTGATATACCATATAGACAAACCAAccaataaaaatactttattatgtACAGGTAAATATATAGAGTATTCTGTTCACGGTTTATGTTCATAGAGTTGTATAATACGAGAATCTTATAGCTTAACATCTACAGGTCTTGTATAGTTGTCTTGATTTctgtacagaaaatgtatgtttaatgtCTAATACTGTGTACTTTTTTTGAGTTTGAAGTTCTTCCTAAATGTTATTGACATCTGTTAGATTGCTTACCTCCactgtgtggttttattttttttaataaatgttttaaacttatttttattctcatcagtacaaaggaaaaaaaaaacgtacagAATTACTTTATTTCCCCCTCACCTCGCCCCCCTCTCCTCCCGGTCCACAGAGTTGTCGCAATATACGAGAAATGCTGAATTCAAAATGCATATTGAGACTTGGATTCCGTTCACAAACACAATACTCTGGCTTTCTGGACTGCTGCTCCCGGTTGTGTAATCTGTCATTTCATCTGTTGCCCCTGGGAAAAGCACCAACAAATGTAAAGGCAAACAGAAAGcattaaaagaaagacaaaaatgatAGTACCTTTGACTGCTGCATCTTATTTCatggtgtgaattgggggtttTCATCAGCTGGTACAAGAGatattgtgacaactctgttgCAGTTACACCTTTTATTGACTTTGTTGTGAAGCCTCCCTTACCACAACACTCTGGGATTTTTATGTTCAACAGCAGACTAACAACCATTTCTCATTGTTCCCATTTCCTGGCAGTAAAAGATATCACAGTAGCTCTTGAATCACCTGTTTAGTGGTTGTACAGTTAATTGTCCCAGTTTAACTTGTTTGTGCTGAATATTTTAGCAACTTCTTGTATTTATTCCACCACATTATGCCTGTATTAAGCTGCTTTGTAATTATGAGGCATTCACCTATACAAAAAAGATAATTAGgaattttatttgttcatttcttttagatttttggtttgtttttgtttttatttcaggttgcttccccccccccccctttgtaATTAGTGATTATAAAAGTATGTAAAACCACTAGTACTGGTACATTTATACTTGTTATTTTGTACTGAATTAACCATCGCGGTTAACTGTGCAATGGTATTCCATGTTGTATTACTGTAATACTGGCATGTGGTTCCCATCCACACACTTTGTGAAGAGTAGGAAAATGACACAGACGTTCttaatttcaaagaaaataattattagaCAACATAAAAAGCTGTGATAATCTCTGGAACCATGTTGAAATGGAACGGACATTTGTATTGCCTTCCAACTGGGGCATTATGGGAAACCAAGGAGGACTGTATATGCTGTTTTGTAGTGTGTGATGTAGCTTCCTTCCTGTGATGGTACTGTTCCAGAATGGACATGCATTTCGTTGCCTTAGCCGATAATGATGCTCAGAAGCAAAACAagaaggttaaaaataaaaataaagaaaccacaATAAAACATGTACCCGCCCCCTAATGTTCAGTCAAGGAAAGTTTGATGCAAGTCATCTTGATTCAGTCTCACTGgtgcacaatattaaaacttACTTGAAAGAGTCTCAAA

Function

symbol description
mark1 Predicted to enable ATP binding activity; chemokine activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within immune response; microtubule cytoskeleton organization; and protein phosphorylation. Predicted to be located in dendrite and extracellular space. Orthologous to human MARK1 (microtubule affinity regulating kinase 1).

NR:

description
serine/threonine-protein kinase MARK1

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005524 ATP binding molecular_function
GO:0008009 chemokine activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001455 True 4018 mRNA 0.47 14 4522509 4551184

Neighbor

gene id symbol gene type direction distance location
AMCG00001454 NA coding downstream 6202 4515384 ~ 4516307 (-)
AMCG00001443 LOC108411957,LOC107753489,LOC108270513,LOC105026838,LOC106564801,LOC103369331 coding downstream 38230 4471081 ~ 4484279 (-)
AMCG00001444 LOC106577203 coding downstream 85664 4415513 ~ 4436845 (-)
AMCG00001449 NA coding downstream 150825 4370525 ~ 4371684 (-)
AMCG00001442 crip3 coding downstream 295599 4203931 ~ 4226910 (-)
AMCG00001458 NA coding upstream 43152 4594336 ~ 4621149 (-)
AMCG00001456 NA coding upstream 171634 4722818 ~ 4730768 (-)
AMCG00001465 LOC108260727,LOC105890925,LOC108260508,LOC106577117 coding upstream 300048 4851232 ~ 4857063 (-)
AMCG00001464 rps27a,LOC100194654,LOC107579955 coding upstream 321572 4872756 ~ 4875185 (-)
AMCG00001466 eml6,LOC106577113 coding upstream 392405 4943589 ~ 4955143 (-)
G157911 NA non-coding downstream 252649 4263926 ~ 4269860 (-)
G157850 NA non-coding downstream 369061 4095235 ~ 4153448 (-)
G157789 NA non-coding downstream 605423 3881840 ~ 3917086 (-)
G157970 NA non-coding upstream 100154 4651338 ~ 4652006 (-)
G158017 rtn4 non-coding upstream 363605 4914789 ~ 4934873 (-)
G158222 NA non-coding upstream 1276312 5827496 ~ 5827789 (-)
G158238 NA non-coding upstream 1353366 5904550 ~ 5909009 (-)
G158245 NA non-coding upstream 1366616 5917800 ~ 5919711 (-)
AMCG00001426 NA other downstream 626430 3874038 ~ 3896079 (-)
AMCG00001416 LOC107564242 other downstream 1000801 3518875 ~ 3521708 (-)
G157671 NA other downstream 1029799 3489767 ~ 3492710 (-)
G157593 NA other downstream 1262554 3222677 ~ 3259955 (-)
AMCG00001396 srsf7 other downstream 2502645 2002361 ~ 2019864 (-)
G158123 NA other upstream 826246 5377430 ~ 5418243 (-)
AMCG00001483 NA other upstream 890443 5441627 ~ 5443581 (-)
G158207 NA other upstream 1044200 5595384 ~ 5597839 (-)
AMCG00001487 NA other upstream 1106778 5657962 ~ 5746325 (-)
AMCG00001491 NA other upstream 1329000 5880184 ~ 5882320 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021360 mark1 coding NC_007133.7 CM002906.2 38337270 ~ 38360205 (-)
grasscarp (Ctenopharyngodon idella) CI01000015_03733443_03765495 MARK1 coding CI01000015 null 3733443 ~ 3765508 (+)