G158238


Basic Information

Item Value
gene id G158238
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5904550 ~ 5909009 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199242
TCGGTTAGGAACTTCTTNNNNGTACAAGAAGTTCCTAACCGATGCACGAGTATGGAGTCCAGGGACAGAGTACTGAAGCATACATTGATCTGTTGCACTTGACATTGAGTCAAACGAGTAGgtgttttatgcattttcattttttacccCTGTAAACTAGAGACTTGTGGCTTTCAAATGATACCAAGACTTAAGTTCTAACGTGTGGAGATTTTGACTTACAAAATTTTTGCGAAAAATGACTCGGGTTCGaaaattgctatttttaataaatacaaaatgatttatCATAACTGATTCAATTTGTATCACATTTTCACTCAGTTTGTCTTAAAAGTTGTGGTGTGACTAGTATTGCAAGCTTAGTACTtgtgtaaaaaagaaaatcgtAACTTTCATAATTCAAAATTATGCTGTAATTTATCTTGAAAAAAGGTGGTAGTGTTGTaatatagtgtg

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU199242 True 459 lncRNA 0.33 2 5904550 5909009

Neighbor

gene id symbol gene type direction distance location
AMCG00001492 NA coding downstream 34285 5822745 ~ 5870265 (-)
AMCG00001490 LOC104944990 coding downstream 103591 5755035 ~ 5800959 (-)
AMCG00001484 NA coding downstream 478889 5419465 ~ 5425661 (-)
AMCG00001485 NA coding downstream 486419 5417495 ~ 5418131 (-)
AMCG00001481 NA coding downstream 524348 5377430 ~ 5380202 (-)
AMCG00001495 NA coding upstream 2643 5911652 ~ 5914357 (-)
AMCG00001494 arfgef3 coding upstream 15554 5924563 ~ 5948685 (-)
AMCG00001496 NA coding upstream 39965 5948974 ~ 5950705 (-)
AMCG00001499 NA coding upstream 109695 6018704 ~ 6032524 (-)
AMCG00001503 NA coding upstream 244757 6153766 ~ 6154350 (-)
G158222 NA non-coding downstream 76761 5827496 ~ 5827789 (-)
G158017 rtn4 non-coding downstream 969677 4914789 ~ 4934873 (-)
G157970 NA non-coding downstream 1252544 4651338 ~ 4652006 (-)
G157911 NA non-coding downstream 1634690 4263926 ~ 4269860 (-)
G157850 NA non-coding downstream 1751102 4095235 ~ 4153448 (-)
G158245 NA non-coding upstream 8791 5917800 ~ 5919711 (-)
G158247 NA non-coding upstream 11707 5920716 ~ 5921922 (-)
G158260 NA non-coding upstream 89118 5998127 ~ 6001058 (-)
G158262 NA non-coding upstream 92390 6001399 ~ 6001621 (-)
G158302 NA non-coding upstream 278762 6187771 ~ 6191513 (-)
AMCG00001491 NA other downstream 22230 5880184 ~ 5882320 (-)
AMCG00001487 NA other downstream 158225 5657962 ~ 5746325 (-)
G158207 NA other downstream 306711 5595384 ~ 5597839 (-)
AMCG00001483 NA other downstream 460969 5441627 ~ 5443581 (-)
G158123 NA other downstream 486307 5377430 ~ 5418243 (-)
AMCG00001514 NA other upstream 598866 6507875 ~ 6509704 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other upstream 863329 6772338 ~ 6776658 (-)
AMCG00001554 NA other upstream 1753082 7662091 ~ 7664572 (-)
AMCG00001557 NA other upstream 1882372 7791381 ~ 7795966 (-)
AMCG00001594 NA other upstream 2183319 8092328 ~ 8095726 (-)

Expression


Co-expression Network