G158260


Basic Information

Item Value
gene id G158260
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5998127 ~ 6001058 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU199264
TTCCTCACACAACCACTGTCAGCTACAGCCACTGAGCCATAACCCATTTAATTACATCTCGCAAGTCCCAAATTATTTCACCtcagcaatatatataataaaacaactgatcctttttatgatgtattagttttttttattattaaaagtttgCAGAGATTTTTGGTAACCTTATCAAcaacattcaaaaatacaattcagacAAAAAGCTAACCCCCCCAAATAAATCTGacaaacattttatattctatatcccttaaatgtaaaaaaaaaaaaacttagaaCATAGTtgtgtttaaaaagcaatacatttggaaaatagTCATACTTTAGAAGTTTATGATCACGTctttttattatacagtgtaGACTAAAAGCACATTGCAATTGCAGTCTGAATTCAAAGCTCtttctaaaatgcattttaatgaacaataatCTCTTTTCCAGTATGCATACTTAAAATATTCTCAGAAATTTActataaacatgaacaaactgTGACAAGCGGTTTGAAATCCTAAAAAAGTTATGTACCGTACCTCACTTTATTATACAAAGAAAAACTGTTCTGCTATACGAAGCCCTTGAGTGACagaatatagtttttttttttatcctataAGGTTTTTTTAATGCTATAAGCTTAGTGCAGTGGACAAAATAgagcaaatacaaaacaacaacagttcttcactgtttcctgtttttttttccccatccaTTCTATTTTCTAATCCAAATAAAAACCTGGGACGAGGCTTTGGGTCTTATCAAGTGTAAAATAgtcgaaagaaaagcacaggTTGGCTTCTCACATTTTGGCctcagtttgttttccatttcggACACCAGAATACATTCCGGATATATAACGCATGGACCTGGGAAAGGTTGAGTTATGTTAGATGGGTGgggcaaacaaaaaaaagtgtgggaAGTGGAAAACAAACTTTGCCGTGGAGGGATTTGCAGTGATGGCATCCGTATTGGGAGTGAGACGAGAGTTCTGTTCCATCAGGGGGAGCGCAAAGTTTCTCCCATGCTTCTCGCTCTACTCGGAGCTGTAGATGTACTTGGTCTTGGCCAGGCCTGTTAAGTCATCCTCGTAGCGGGGCAGGCAGCAGAACAGGATGCCGCAGCCGATCATGAGCACGGTGGCGCCCCAGCCGAAGCCGTACGCCCAGGAGTAGTCGTAGTGGCCCTCGTAGATGAGCTCGTTGAATTTGCAGGGGTAGACGACCAGGGCAATGATCTGCACAATTACGCAATGAAGAGGAGTGTGCCAATGATTGGAAGAAGGGTGATGTTGAGGGTGCAACAGAGAGCCACTACAGAGAGGATGAAGGCCAACAGCAGGATGAGGAGACCAATAATCATCAGGGCAGCAACAGCTTGGGCCCAGGCTGAAATGAAACCAAGACACAGAGGCGTCACATTAGCGGAAACCGGGATTTAGGTATGTTTGTGA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU199264 True 1471 lncRNA 0.40 2 5998127 6001058

Neighbor

gene id symbol gene type direction distance location
AMCG00001496 NA coding downstream 47422 5948974 ~ 5950705 (-)
AMCG00001494 arfgef3 coding downstream 49442 5924563 ~ 5948685 (-)
AMCG00001495 NA coding downstream 83770 5911652 ~ 5914357 (-)
AMCG00001492 NA coding downstream 127862 5822745 ~ 5870265 (-)
AMCG00001490 LOC104944990 coding downstream 197168 5755035 ~ 5800959 (-)
AMCG00001499 NA coding upstream 17646 6018704 ~ 6032524 (-)
AMCG00001503 NA coding upstream 152708 6153766 ~ 6154350 (-)
AMCG00001502 NA coding upstream 197377 6198435 ~ 6223731 (-)
AMCG00001504 NA coding upstream 264471 6265529 ~ 6266399 (-)
AMCG00001505 NA coding upstream 408610 6409668 ~ 6419886 (-)
G158247 NA non-coding downstream 76205 5920716 ~ 5921922 (-)
G158245 NA non-coding downstream 78416 5917800 ~ 5919711 (-)
G158238 NA non-coding downstream 89118 5904550 ~ 5909009 (-)
G158222 NA non-coding downstream 170338 5827496 ~ 5827789 (-)
G158017 rtn4 non-coding downstream 1063254 4914789 ~ 4934873 (-)
G158262 NA non-coding upstream 341 6001399 ~ 6001621 (-)
G158302 NA non-coding upstream 186713 6187771 ~ 6191513 (-)
G158326 NA non-coding upstream 262165 6263223 ~ 6263983 (-)
G158328 NA non-coding upstream 357191 6358249 ~ 6358666 (-)
G158362 NA non-coding upstream 505255 6506313 ~ 6506516 (-)
AMCG00001491 NA other downstream 115807 5880184 ~ 5882320 (-)
AMCG00001487 NA other downstream 251802 5657962 ~ 5746325 (-)
G158207 NA other downstream 400288 5595384 ~ 5597839 (-)
AMCG00001483 NA other downstream 554546 5441627 ~ 5443581 (-)
G158123 NA other downstream 579884 5377430 ~ 5418243 (-)
AMCG00001514 NA other upstream 506817 6507875 ~ 6509704 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other upstream 771280 6772338 ~ 6776658 (-)
AMCG00001554 NA other upstream 1661033 7662091 ~ 7664572 (-)
AMCG00001557 NA other upstream 1790323 7791381 ~ 7795966 (-)
AMCG00001594 NA other upstream 2091270 8092328 ~ 8095726 (-)

Expression


Co-expression Network