AMCG00001484


Basic Information

Item Value
gene id AMCG00001484
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5419465 ~ 5425661 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001484
GAAATTTAAAATCAGAGCAAGGACCTCCCCCCTGAAACAAGAGAAGTACTCAACCTGTATGGTTTTCCTTAAAATCAGGGATAGAATTCCCAGATAGATTGATTATGTGTGTTGCAAAACAGTATAGTCCTGCTTGTCATGCAACCTTTGGTTGGGAGGGTGGAGCTTCCCTTCCCACATGGCTCCTCACTGTTCAGACAGTTGCATATAAAAAGTGTAAGGAAGGGAAGGCAGAGGACACAGAATACAGAAGGCAGAATGCTTACACTACAGCACAAAACATGAGTAACCCATTTGTAAAAGAAATGAAGGCAAGGCTGGAAGTGGCCAAAAATATGATGGATAAAGACAAAGTCTTCAGGATCAATGGAATATTATATCCCACCCTCGTGGTCAAACCAGAGAATTTCAATGCAATGGAGACTTTTGAGGCTAGGGAAGATGACATAATGCTAGCAACCTATCCAAAATGTGGGTTTAACTGGATGGTAGGGATGCTGCGTAAAATTGCTGCAGCTGCTAAAAACAGTGCAGGTGACAATCCAGACAAGTGGCCTCCCTTTCATCCCTTATTGGAAGGCATTCATCCAGAAAAATACCAGtctaTAAATGAGGCTCCTTCTCCAAGACTTCTAGGAACACACATGCACCCCGACAACATACCGTCTTCCTTTGCTGAGAAGAATACAAAGATTCTCCTGGTGTTGCGCAACCCTAAAGACACTATAGTCTCTTACTTCCACTTCACCAACAAAAACCCTGTTCTGCCAACTGCTGAGTCCTGGGACAAGTTCTTTGCAGATTTCATGAGTGGAGAAGttttttgGGGCTCTTATTTTGACCATGCCCTTTCTTGGGAGAAGCACATAGACAATCCTAATATCATGTTTGTGACTTATGAAGACCTGAAAGAGAACCTGAGTGAAGAAATCAAGCAGATTGCCAAATTCTTCAATTTCACCCTGAGTGAGGAGCAGATCAACACTATTGCTCAAGAGAGCACTTTCACAGTCATGAAAGAAAATTCCGAGAACTCACATGGCCCGTTGAGCAATGTGTACTTCAGGAGAGGGGAAGTGGGAGACTGGAAAAATCACTTCAGCGAAGACCAGAGTAAAGAGATGGATGCTAGGTTTGAGAAGTGCCTTGCAGGAACCAAGATAGGGGCCAGACTGAAGTATGATATATACTGCCAGTAGAGGACACAGCTGCAGCAGTTTCAAGGGAAAGGACAACAAGGGACGCCTTGGGAGATCAAGGAATGGAAACTGGAGGGAAACCTATGAAATCAGTGCCTTCTCAAGACAAATTCATAAATCCTTACTATACTATAATACTGTCACAGTGATTGTGTCTTGTAtatcttttctgttttaagtaACATGAAGTGTCTTATTCTTGAGCTCAATTTTAACAACTGAATGTGAGACCACAAATCAGAATTTAAGGACTTAATCAACAGTAAGGATTTAAATTCAGTTGTATGATTAATATACGATGCAGACTAtatagtttcttttttttttgtatgatatTTTGATATGAAATCAGACTTTTTATAATATGAATTGCATTTTATGGAggtcaaaaatgtatttccttaagAATGAGAAAAACAAGATGACAACTTGAAAATTGTATGTACTGAATCCAAAGTATCTGTCTTTTCAAAAGACCTTTATCATGcttaagaaaactaaattaaaaggCTCAACATTTtgaaggtgggggggtggttacatttttgtaaatattttaaccatttcatgtttatttccTCCCCAATATTAACCGATATCAAAATTCAAACtaatattttgaaatcattTTTGTGGAGAAAAGATGGCTTGTTCTACCATCTAGTGTGCATTGTTCTTCATTGCAGCCTTTCCGTTTAGCTGAATGGCTGTCGAGCAACAGTGAGAGCTTCTTCTCTGTAATGTACTGTTTTGACACATAGCTTATAGTTTGCTGCCCAGGGACCATACAGATTAAGACAGCTGgagtctgttttgtttcccagGCATAACGTGAGTGTTGCTGTGAACTCCCTAAGCCCTGTGGTATTTCAtatcaaaacagcatcaatcaTAAATAAGACCACAAATCTACCATTATCTCTTCAGTTACAAAAGCCTTTGACTATAGTGCATGGGTAGATTTAGGAGTgctgtacttgtgtgtgtgtgtgtgtgtgtgtaggtgtgtagtTATTCTACCACAACCAACAAGTTCTTCTTAAGAGCTGTTTATACAGTGTTCAAACATGTAAGACTGACCGTGCTTATTTTGACATGTCAAACAACCACAGTGGAGCACTTCCAAAATAATCCACTGGTTTGGTAATAGATGCACAAGGAGGCTTAACCCTATGTGCTCCATGAAACAGATCTGTAGCCGTAAAATGTCACACAACGTAATATTTACAGGAATGTTCACAAGGAGTTGTTCTTTCATAAATACACTTGTCTTGTTACATTGCCTCCTGTAATGAAACAGGACCACCCTCAGTTTcctattaaaagtattaaaacctAAATCCTGACAACATTAgacatgtatataattaatgtcTTGTTGTAATACTTACACTGTGGGCAGAAGCTGTTGCCAGATTGTGACACCAACAACTTTTTCAACATGTTATTTGTGttgatcattttgaaatgtaaccttAACTCTCTTAATAACTCTCACTGCTTTTCTTTGCATAGCTGAACAGCCAACTACACAAAAAGCTTCCTAATAAAAGTTAATACACCATAGACATTAGCAGCacaattttgaaacaaaaacaaaatatactgttaATTGAACTATGACTGTTACACAAAAGTGTGAAGCTTGTTTCACATAAAGCTAATAATTATGTCCATCGATTTATACATTCaagttgattaattaaaaacaaatacaata

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K22523 SULT6B1; sulfotransferase 6B1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001484 True 2919 mRNA 0.38 7 5419465 5425661

Neighbor

gene id symbol gene type direction distance location
AMCG00001485 NA coding downstream 1334 5417495 ~ 5418131 (-)
AMCG00001481 NA coding downstream 39263 5377430 ~ 5380202 (-)
AMCG00001482 slc30a6 coding downstream 100555 5314695 ~ 5318910 (-)
AMCG00001472 NA coding downstream 185406 5228893 ~ 5234059 (-)
AMCG00001471 NA coding downstream 221733 5189982 ~ 5197732 (-)
AMCG00001490 LOC104944990 coding upstream 329374 5755035 ~ 5800959 (-)
AMCG00001492 NA coding upstream 397084 5822745 ~ 5870265 (-)
AMCG00001495 NA coding upstream 485991 5911652 ~ 5914357 (-)
AMCG00001494 arfgef3 coding upstream 498902 5924563 ~ 5948685 (-)
AMCG00001496 NA coding upstream 523313 5948974 ~ 5950705 (-)
G158017 rtn4 non-coding downstream 484592 4914789 ~ 4934873 (-)
G157970 NA non-coding downstream 767459 4651338 ~ 4652006 (-)
G157911 NA non-coding downstream 1149605 4263926 ~ 4269860 (-)
G157850 NA non-coding downstream 1266017 4095235 ~ 4153448 (-)
G157798 NA non-coding downstream 1503330 3914113 ~ 3916135 (-)
G158222 NA non-coding upstream 401835 5827496 ~ 5827789 (-)
G158238 NA non-coding upstream 478889 5904550 ~ 5909009 (-)
G158245 NA non-coding upstream 492139 5917800 ~ 5919711 (-)
G158247 NA non-coding upstream 495055 5920716 ~ 5921922 (-)
G158260 NA non-coding upstream 572466 5998127 ~ 6001058 (-)
G158123 NA other downstream 1222 5377430 ~ 5418243 (-)
AMCG00001426 NA other downstream 1523386 3874038 ~ 3896079 (-)
AMCG00001416 LOC107564242 other downstream 1897757 3518875 ~ 3521708 (-)
G157671 NA other downstream 1926755 3489767 ~ 3492710 (-)
G157593 NA other downstream 2159510 3222677 ~ 3259955 (-)
AMCG00001483 NA other upstream 15966 5441627 ~ 5443581 (-)
G158207 NA other upstream 169723 5595384 ~ 5597839 (-)
AMCG00001487 NA other upstream 232301 5657962 ~ 5746325 (-)
AMCG00001491 NA other upstream 454523 5880184 ~ 5882320 (-)
AMCG00001514 NA other upstream 1082214 6507875 ~ 6509704 (-)

Expression


Co-expression Network