RNA id: TU199232


Basic Information

Item Value
RNA id TU199232
length 283
RNA type TUCP
GC content 0.59
exon number 3
gene id AMCG00001491
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5880184 ~ 5882320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAACCAGAGAATGAGGAGAGCTGTTTCCCCGGTGCAGAGGGCCTCCAGGGAGATGGCCGTGGTGTCCAGTGGCGAAGTGATCCTGACTGCCTCTGAGCTCCCTGCTGTGGACAGGAGGGCTTCTCCCAGTGAAGTGCCCCAGGCCTTCGGCTATGGTGTGCTGACTGTGGCTGCCTTCACGGTgcttgtgctctgtgctgtggtgCTGGTGGCTGTGTGGAGAGCCAGGCCCCACATGTGGGCATCCCAACTGTAACTGGAGCAGGGTTTTGAATAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199226 lncRNA downstream 52395 5827496 ~ 5827789 (-) True G158222
TU199216 lncRNA downstream 218970 5659764 ~ 5661214 (-) False AMCG00001487
TU198989 lncRNA downstream 945311 4914789 ~ 4934873 (-) True G158017
TU198919 lncRNA downstream 1228178 4651338 ~ 4652006 (-) True G157970
TU198846 lncRNA downstream 1610324 4263926 ~ 4269860 (-) True G157911
TU199242 lncRNA upstream 23895 5904550 ~ 5909009 (-) True G158238
TU199249 lncRNA upstream 37145 5917800 ~ 5919711 (-) True G158245
TU199251 lncRNA upstream 40061 5920716 ~ 5921922 (-) True G158247
TU199264 lncRNA upstream 117472 5998127 ~ 6001058 (-) True G158260
TU199268 lncRNA upstream 120744 6001399 ~ 6001621 (-) True G158262
AMCG00001492 mRNA downstream 9919 5822745 ~ 5870265 (-) True AMCG00001492
AMCG00001490 mRNA downstream 79225 5755035 ~ 5800959 (-) True AMCG00001490
AMCG00001487 mRNA downstream 133859 5657962 ~ 5746325 (-) True AMCG00001487
AMCG00001483 mRNA downstream 436808 5441627 ~ 5443376 (-) True AMCG00001483
AMCG00001484 mRNA downstream 454523 5419465 ~ 5425661 (-) True AMCG00001484
AMCG00001495 mRNA upstream 30997 5911652 ~ 5914357 (-) True AMCG00001495
AMCG00001494 mRNA upstream 43908 5924563 ~ 5948685 (-) True AMCG00001494
AMCG00001496 mRNA upstream 68319 5948974 ~ 5950705 (-) True AMCG00001496
AMCG00001499 mRNA upstream 138049 6018704 ~ 6032524 (-) True AMCG00001499
AMCG00001503 mRNA upstream 273111 6153766 ~ 6154350 (-) True AMCG00001503
TU199208 other downstream 282345 5595384 ~ 5597839 (-) True G158207
TU199135 other downstream 436603 5442857 ~ 5443581 (-) False AMCG00001483
TU199111 other downstream 461941 5377430 ~ 5418243 (-) True G158123
TU199110 other downstream 500225 5377430 ~ 5379959 (-) False G158123
TU198559 other downstream 2387474 3489767 ~ 3492710 (-) True G157671
TU199388 other upstream 627284 6507939 ~ 6509683 (-) False AMCG00001514
TU199465 other upstream 894952 6775607 ~ 6776658 (-) False G158434
TU199466 other upstream 894952 6775607 ~ 6776658 (-) False G158434
TU199737 other upstream 1781436 7662091 ~ 7664572 (-) True AMCG00001554
TU200134 other upstream 2633712 8514367 ~ 8540258 (-) True G158971

Expression Profile