RNA id: TU199249


Basic Information

Item Value
RNA id TU199249
length 1912
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G158245
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5917800 ~ 5919711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaaaccagagaaactgataattttgcagtggtctcaattttttccagagatgtatatatatagtttgccATTGTTGCCATGGTATTTTGAACACATTGAACCAAAGCCAATCACATTTCTGTTGCAGCCATCCAGTTAGTGCTACTGAGCCAGAAAATACATTCAGCATGTTCTGGATAGTAGGTTTTACTTTCAGATTTAACGTAATTTCCCCCCCCAATATCGATCTCCTAAACAAATTGTTCGATAGTTCCCTTCAGTAGAGTATCAATGCAGTAACAATACAGATAAGGAACTGTCTAACTGACAAGGCAAATGTGGTTGAAGTGTAGCCACACAAAATGTGTCCTCATTGTCCCTCTTatctttttcatatttaacataaaGTCAAATCTGACAGTTTTACGACATTTAAAAGACCATTATTCCAAATCTTTTTAATATCTTAAAGGCATATGATTAAaggacaaaaacatttacaaaaataattagtgGCATTTCATGTTTAATGCCCGTTTCTTAAAACACTGTCCCCAAAAAGACTCGTCTCATTAAAACAGCCGATATGAAAGCTGAGAAACAGTGATGGATCTCACTTGTGTGCCAATGTAGGCTGTTGGCACCACTGTCAAGAATCTGGATCCGTTTATCTTAATTATTGTGCCGACActttatccaaggtgatttgtttgttcttctaATGCCAATTATAAACATAGAAAGAAGGGTAAACGATCAAAATAGTGTGAAAGAAAAGGTGAGAATGTGAGGTTAGGCTTCTGCAAAACTGGATAAGGACACTTTGAAGTGCACCTCAAATCTGGTTTGGGGGAAAAAGCAAACCATGCAGCACTTAAAGAGGGCCTGGATTAAGCATTCtaacaatttattataatcTGTGCCATCGTTTGTGAATGGATAGAAAACGGTTTAAATTAACAGTATTTATGTTATCTGCTAAGAGTTTTTTGGGTTTTTCCTCGTCTAATGCAAACTTTTTGACCAGTCAGTGCTTAACCGCAAACCGCCGCAATCAGTGTCAGTAAATGCGCAAAACATCATTAGTCACCCATCCATATTCAAGGCTTTAGGATAAGAGGATAGAGATCATAAAATATGGATTaagatatataatattattagaAGAGGTCATTTTGGTGGAGGACAGTGTTTGAATGTCAAAAAGACTTTCAGTAGAAACGTGCTGCCGTAAAGACTATAGGAGTGCAGTTGTCAGATCTTTATAACAAAGTAAAATGATTGCAAGGACCCAGAAAAGATGCAGgtaattacttttcattatgcaatacagacaaacaaatgGATAGCAGAGCAATGCATACAGTGGTAGATCTAAGGCCAAACTTGTATTTCACAGCCCAACTTATAGTATTGCTTCTGGcttcaatcaataaatcaactTTAATCAATAAAGCCCCCCCGCCAAACAGATAATGTTTAAATCCAGTATTACTAGAGTGCTCTGTAAAGTCATTTGAAGGTGGAGGGAAGAGATTagtttaacttgtttttataattaatataatttaaaatcgATTCCATGTTACTCCTTCCCATATCTTTATTATTACCAAACTATGTACAGGAAgtacaaaatgttacattatggGTACAGATTCCTTATGGTGATgttctgaaaatgttacaagCAGCAAGGTGGCATAATACAGGGACATTGTTGTGGATAACCGAGAAGGTCAACATCCTTGCAGACCAATTGATTTTAAACTTTCTGCCTTTGATTTTGCAGAGggactttattatttttaaagtgattgtgttttggctgcaaacaaaatgcattttggttttctctgctgatgtaatttgtttctacgtaatcaaaattatatattctatTGTGTGTCCCAGATTGTACTTTGTTGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199242 lncRNA downstream 8791 5904550 ~ 5909009 (-) True G158238
TU199226 lncRNA downstream 90011 5827496 ~ 5827789 (-) True G158222
TU199216 lncRNA downstream 256586 5659764 ~ 5661214 (-) False AMCG00001487
TU198989 lncRNA downstream 982927 4914789 ~ 4934873 (-) True G158017
TU198919 lncRNA downstream 1265794 4651338 ~ 4652006 (-) True G157970
TU199251 lncRNA upstream 1005 5920716 ~ 5921922 (-) True G158247
TU199264 lncRNA upstream 78416 5998127 ~ 6001058 (-) True G158260
TU199268 lncRNA upstream 81688 6001399 ~ 6001621 (-) True G158262
TU199310 lncRNA upstream 268060 6187771 ~ 6191513 (-) True G158302
TU199339 lncRNA upstream 343512 6263223 ~ 6263983 (-) True G158326
AMCG00001495 mRNA downstream 3443 5911652 ~ 5914357 (-) True AMCG00001495
AMCG00001491 mRNA downstream 35480 5880208 ~ 5882320 (-) True AMCG00001491
AMCG00001492 mRNA downstream 47535 5822745 ~ 5870265 (-) True AMCG00001492
AMCG00001490 mRNA downstream 116841 5755035 ~ 5800959 (-) True AMCG00001490
AMCG00001487 mRNA downstream 171475 5657962 ~ 5746325 (-) True AMCG00001487
AMCG00001494 mRNA upstream 4852 5924563 ~ 5948685 (-) True AMCG00001494
AMCG00001496 mRNA upstream 29263 5948974 ~ 5950705 (-) True AMCG00001496
AMCG00001499 mRNA upstream 98993 6018704 ~ 6032524 (-) True AMCG00001499
AMCG00001503 mRNA upstream 234055 6153766 ~ 6154350 (-) True AMCG00001503
AMCG00001502 mRNA upstream 278724 6198435 ~ 6223731 (-) True AMCG00001502
TU199232 other downstream 37145 5880184 ~ 5880655 (-) False AMCG00001491
TU199208 other downstream 319961 5595384 ~ 5597839 (-) True G158207
TU199135 other downstream 474219 5442857 ~ 5443581 (-) False AMCG00001483
TU199111 other downstream 499557 5377430 ~ 5418243 (-) True G158123
TU199110 other downstream 537841 5377430 ~ 5379959 (-) False G158123
TU199388 other upstream 588228 6507939 ~ 6509683 (-) False AMCG00001514
TU199465 other upstream 855896 6775607 ~ 6776658 (-) False G158434
TU199466 other upstream 855896 6775607 ~ 6776658 (-) False G158434
TU199737 other upstream 1742380 7662091 ~ 7664572 (-) True AMCG00001554
TU200134 other upstream 2594656 8514367 ~ 8540258 (-) True G158971

Expression Profile