RNA id: AMCG00001502


Basic Information

Item Value
RNA id AMCG00001502
length 8124
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00001502
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6198435 ~ 6223731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGTGTGGCAAGTTTTGCGGTTGATCGAAAGTGCCGATTGCTGATTTTATAAGTGCGGGAGTTCGGGACTCGTGTGACGGGTGAGGATTTGGGTCTGATCCGAGTCACAGTATGGCTCATCAGCCTCTTTAATCCGAGTGCGATCGGAGTCTGAAGAACACCTGGAAGTCCAAAGGCGATCGGAACGGGGGGTCGGTACTAATAGACACTTTCTGCTTACTTTATATAcacaaatgcagttttgttAGATGTTTTATTAGACGCATGAATATATAGACACGATCGTGGATACAGTCACAGTAGCTGGGGCTGATTCATTGAGAGACGTGTAACTTTAACCGGTAGCCTCTGCGTAAAGCCGGCTGGTCTGTGTACACTTCACTGGGGGATCCACTCTTGCTTTACTGGATTGTTCCCCCCCCGTAGTCGTTTTTATTTTGCCGTCTGCTTCCACAACCGAGCCCCTTATGGTGAGGCTGCGGCTCCCGAGTCATGGATCTTCCCCGGGCCGGTTTCCCAAACGGTGAAGAGCGGCCGGACAGCGGCGGCGATGGTGCCCGGGCTGAGTCCTCCTCCCCCGGTAGCAGCCCGTGGAGTCTCTCCGCTCCGGGCTGCGGCGGCGCTGCTCTGTGGACGGCGGTGTTTGACTACGAGGCGAGTGGGGAGGACGAGCTGAGTCTGCGGCGGGGGGAGGTGGTGGAGGTGCTTTCTAAGGATGCCGCCATCTCGGGGGACGAGGGCTGGTGGACGGGCAAGATCAACCACCGCGTCGGGATCTTCCCTGCTAATTACGTGACCTATCACTGCCAGCCAGCTATTTATCGGCGGATACCCAGCGGCGGGGCGGCCGGGGCGCAGGAGAGTGTCCCCAGCTTGCCGGTGAAGATCGACTTCGGGGAACTCGTCCTGGAGGAGATTATTGGAGTCGGGGGCTTCGGTAAAGTGTACCGGGGGACATGGAGGCATCAGGAGGTGGCGGTCAAGGCTGCCAGGCAGGACCCGGACGAGGACATCACTGCCACGGCGGAAAGCGTCAAGCAAGAGGCCAAGCTGTTTTCAATGCTGCAGCACCCCAATATCATCAAACTGGAAGGGGTTTGTCTGGAGGAGCCCAATCTGTGCTTGGTTATGGAATATGCCCGTGGAGGGACCTTGAACCGGGCACTGACTGGGCGAAGGATACCTCCACACATCCTGGTGAACTGGGCCGTGCAGATAGCCATGGGCATGCAATACCTACACGAAGAAGCCGTGGTCCCCATCATCCACCGAGACCTCAAATCCAGCAACATATTACTActtgaaaaaatagaaaatggagACATCGTCAAAAAGACCCTGAAGATCACCGACTTCGGTTTGGCCAGAGAGTGGCACAAGACCACGAAGATGAGTGCAGCGGGAACATACTCCTGGATGGCCCCCGAAGTCATCAAGTCCTCGCTGTTCTCCAAGGGCAGTGACGTTTGGAGTCGGGCTCTAAAGAAGCCTAAAGAGAAGGGAATTATCTCTATTCCTGTAAACGTGAAGCTGCTGACTGGAGAGGTCCCTTACCGTGGGATCGACGGTCTTGCTGTCGCCTACGGGGTGGCGGTCAACAAACTCACTCTTCCCATCCCATCCACCTGCCCCGAACCCTTTGCCAAGTTGATGGAAGAGTGCTGGGAGCAGGACCCCCACATCCGGCCCTCCTTCGCCGCCATCCTGGAGCAGCTGACTGCCATCGAGGAGGCTGTCATGGCCACGATGCCCCAGGAATCCTTCCACTCCATGCAGGATGACTGGAAGGTGGAGATCCAGGAGATGTTTGACGAGCTGAGGACAAAGGAGAAGGAGCTGCGTTCGCGGGAGGAGGAGCTGACCCGGGCGGCGCTGCAGCAGAAGTCGCAGGAGGAGCTGCTGAAGCGCCGGGAGCAGCAGCTGGCGGAGCGTGAGATCAACGTGCTGGAGCGCGAGCTCAACATCCTCATCTTCCAGCTCAACAAGGACAAGCCCAACGTCAAGAAGAGGAAGGGCAAATTCAAGCGTAGCCGCTTAAAGCTCAAGGACGGCAACCGCATCAGCCTCCCATCAGATTTCCAGCACAAAATAACAGTTCAGGCCTCCCCTACAATGGACAAGAGGAGAAGTTTGAACAGCAACAGCTCCAGTCCTCCCAGCAGCCCCACACTCATCCCGCGCCTCAGAGCGATTCAGTTGACTCTGGACGAAAGCAACAGAACCTGGGGGAGAAGCACAATTTACAAGCAGGAGGAGTTTGAAGACGTCAAGAAGggctttaaaaagaaaggcCGCACGTGGGGACCCAGCTCCCTCCAGACGAAGGAGCAGGTGAATGGTGCAGAAAGGATAAGACCCCTCTCTGATGGGAGCAACCCCTGGTCCACCAGTCTGCTGAAGACCCAGAAGTCCGTTCCTTTAGCCGCACTGTTTGCAGAGCAGGGCATGTTTCCGGATGAGTCCGGGTCAGCTGAAGGCCCTGACAGCAATAAACCAAAGCAACTGAAGTTCCCTAATCAGGTGTACATCGATCTACCTCTGTGGAAGGACGAGCAGGGCGAAGGGGGGTGTGCGGCCGAGAGTCTGGAGGACAGCACCCCCGCCAGCTCTGCCAGCACCACCCCTCAGGTCACTCCCACCAACAGCCTGAAGAGGGTAGCGCAGCGCCGGCGGACGGACGCGGTGCTGTACGGCTGCGCTTCGCTGCTGGCCTCCGTGGCCCTGGGCTTCGACATCAGGGACGCCCTCAAGGCCCAGCCGGTGGAGGAGCCCGAGCTGcgggaggagaagaagaagcgGGAGGGCATCTTTCAGCGAGCCACACGCTTCCGCCGCAGCACCAGCCCGCCCAACCGCATGAAGAAGGACGAGGGCAGCGTCCTGCCCCagggctcctcctcctcctctaacCCGGTCAACCTGCTCTCCATGTCGGCCATCTCCGAATGCAACTCCACCAAGTGCTTGCTGCAGCCCGACTCGGACGGCCTGTCCCGCTCCTCCTCCAGGGAGGACTCTCTGACTGAAGACGCCGCTCACAGGCTGCACAATGTCTCCAGTGCCCCGGCTGACATGAACTGTGGGGCCCCTGGAGGCCCCAAGAAAGACAACCTCGACTCTGTGAACCCCCATCCCCCCAGTGCAGCTTCTCACAAGAGGACCAAGTCTGCCAGCAGCGCCATGCCAACCTCTAACGGCAGCTCCAGCCCCCACTTAGACCCATCAGTATTCCCCCAGAAGGCGCTCAGAAGCACAGCTGCCCGAGACCCCACCCCGGACCGGTCGTGCCCAGGAGACGGCGCGTCACGGCCTCGGCCCCTGTCGCTTAAAAGCAAAGCCCACTCCTGGGCCCTCCTGAGAGGCCGCAACAAGAGCTACTCCCTGGGACCCTATTCGGGCGATAAAAGCGCACAAAACTTAAACATTTTACTCGGTGCCGAGACCAAGGCCGGCTGCCACGTGGTACCCGGGGGCTGTTCCTTGCTGGACATGGACACAGAGGGGCAGAAACGGGACTGCACTGTTCCCCTCTGTCGAATTCAGAGCAAGCCTGGGAGACTGCCACTCTACGAACTGGAAAAAGAGTTCCTGTCTTAGAGAACACTGCATTGTAAAGCCCCGTGgtcgtgtgtctgtttgttgACATGTAATCAGAAAGCCTGTCTACAGCTGTATTCTGTCTAGGGATAGGACTGCTCGCATGAAGagtgtttctttatttagatCTGTGTAGACTTCAAAAGTTAATTTAAGCTGCTGAAAAGCTCAAGGCTTTTTCCTTCCAGAAACAGATGAAGAGAtgagtttaatttaaacacacattccATTCCCACACAACGTTGTGGTTCGTACTACTGTAACGGAAAATCCACAGTGACACATTTAGACACACCATTTTCGAGTGACTTTAGTTTTTATGTAAAGTAATCACAcgtgatttgtttctgtttaagaGGTGTGGATCTAAGAATGTTGTGTAATTTCTTGGTTTTATGAtgctaaaattattttttcatccactgtatatgtttgtacCCGATCTAGCTATGACAGTGTTCAGCAGTTCCAGGGCAAGCTACTGCCAAGATAGTATCGAATGCGTCTCTGCGTTTGATTTTCTAATTATTGTCAGGGGACAGTAGTGGACTAGTGACCAGAATATAGGTTTTAGCATCTCCAGAAGGTATTCTCAATACATGAGACTATAATTGTCCTACCAGCTGCTATAAACAGACTAGTTGTGttgaatgtataaattatacttaaaaaaaaaaaaaaatgtaattgacctGTTTTTGGTGATCTTAAGCAAGTAATATTTGAAGTGAAAAACTGGAAAGAATTGGTGTGCAATGTTTGCCCAATTTATCCATTGAATACTAGttttcttgtatattttttacGATGTGCACATTTTATAAGATAGAATTTACTTTTGTATAAGAGAAATGGAACATATTAGCAGGTAAATGACCAATGGTCGCGTGTTTAATAGGTATCGAGTTCTACAAATCGTGTTTATGAATTTTGTTCACAGTGGTATTTTTGGATTGAaattctttaaaatgcatttgcaggTATCCCTCAAATTCCAGGCATCTGCCCATTTCCCCGTCTTCTCCCTGACTACCCTGTCAGATGTTGATCCAGTGACAACCTTCCCAAAAAATAAGCGCTGAAGATAATACTCGAGTCTTGGTTAGGCTGTACTGATATAACCAGTTTGATCAGATTTGACTATTCAACTGGGCCGCCCTTTATTCAAAatcaattgaattattttagtaCCTCGACTCTAGAGTTTACTTGCAGTATTGACTGTAAGCGATTGTCAACTTTATCTAAAGGAAATTAAAGCATAACTGTATTTGACTATTTAACGTCAAATGAAAACTGTTCTTTCGTGTTTATTCTGATTAGATCAGAAGTCAGTTGCCATCTTCAAGGCCCGGGCAATTTTGTTCAGTGAAGTCAATAAGATGTTGGGAGGAATGAAAATACCAAATCTCCTccagatcaaaaataaaatgtccaatatttgtgtatatgatATTATATTGCAGAAATCCTAAGTAAATCTCAGGTTGTCTTGTCTTTTGCAAATTAGTACAGACTACTAGTATAGGTCAGTGATTGCCTGATCACTGTCTGTAAACTGCATGGTGCTGTATGGAttgcttttggtttgttttcactaTCATGTTCAATTATTATGGCTATGACATAGGCTAGTTATAATACTGATAGAAATTCactactttttttctttactttgtaAATCTAGATCCAAACGGAGGCCTTCAGTAATGATTCTCCATGAACTCCACTACTACGTTTTTAATGAGGTTCGTTAGTGCATGACCTCAGAACTCTAATATGATGCTTTGAGCTGAAGATTTGTTTCTTGACCACATCCAGCAATCTTGCCCCCGAAATTGCATTTTACAGTAGTAGCAGATGGTCTTACAAactaaatatgtttgtgtgcaaTTCAAATATCCCAAATTaaatttccattcatttttacCCAAATTATGTCCAGCTTCTAATGCATCAGTCAGTGCCTAATACAGTTGTCTGTCTTTATCAATTTCTCTTTACATGCACAGTATTATATGTACTGTGCTACTAATGGGATTGTGATCCCATAActcaaaatgtgtattaaagaCCATTCTTACAGTCTTAACGAAGTGCAATTATGGACCGGGCTGCATCGATAGGCAGAAGCCCTTGCTTACTGAGTCTATACTGTCTGGGAGTGTGCCATATTTTTACATTGGGTgcaaataaaatgctatttatACACAGTGTTACAGTATGAAATAGGCAGTCTCTTTCTCTGTTCCCGCTAACTTTCAATTTTGCCTTGTTCATAGTCTTATGTAATTTGGTCTAAGAATATAGCACAATATCTATACATAGATGGTTGATTCACCTCTGTTCTGTATTAATTTAGTATgcctgaaatgtttttatttttatgttggtAGAAGAATTGTAAACCACTTGTTACGTTTGCCAATCACATGATCTGTGTTCGGGTCGTGTTCTGCCTGGGATTCAGAAACCACAGCATCTCGACTGCCAAGCTGACTAGGTCAATCTGTCAAGGGGTGGGAATATTTTCAACATTGTTTAGTTTTCTAAATCATTTTCTATCATTCTGCTAGATTAAGATATGCAAAGAGATATCTGTATAATACACTTCTGTTTTTGCTGAGGTAAAACAATGAAGATTCCAGTAGAATACCGTTGTGATGTAAACGTTTACAGTAAACgtttacagtaaatgttttgttggtGTTTAGGAAAGCTACTGCAAATGAAGAAGGCAATCAATGCTACTTCAGAGCTGCTGGTTCTTCAGCTACACGTTTGACCAGGGAGTAAATGTCCCTTCTTGCTGTATCAAGTTATTTGCACCAAAGTGAAATCATCCCTTTAATGGGCAAAGAAATGATGACAAAGCAGTGGTTGTTTGTACAATCTGGATTAGTTGTGTATATTGGTATATTAGTTTTTGTACATACCTGCTGCATCCTTGGCCACTCTGATGAAAGCTGTTGTAaaatgtctgtgtatatgtatgtgtaacaCTGTAGCTTTACGTAGGGTGCTGAGAAAAAGACAATGGATGCCGTTTCCTTGAGACCATCATAGCTGCTGTTTTTCGTTTTTGTTCATATGTTAGAGCTCTCCTGTGTTCCAGtcaccctcctctctctcaaaGTATTTAATCTACAAGTAGCAATATGAGATGGCAGATCCCTACAGGATGGTAATTATGTCACTGTGAGTTAcaattaagatatatatatatatatatatatatatatatatattggtctTTTCCCTAATCACTGCCAAGCCTCTACAACTGCACTATTGGTATCCACCCAGTCCCAAAATCAAGACGATATGACCTTATTCCGAAGGGATTTTCCTGTTTTGGAAGTAAGGGTTGTTGACGGTTGAGGGGTCTCCTTCCAGGCCATGACTCCCacccataatatatttttttcatttggtggCGATTTCAGCATTGTGGATTGTAGTGATGTTAAGAACAGAAAGAAcatttacaatcgagaggaggccattcgacccatcgtgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctatttgtaaatgttcccaagttttcagcttcaaccacatcgctgcggagtttgttcagattgcgACAACATTGGTGTGTTTGTGATTGTCACAAAGAATAGATGCATCATTTGCAATTTGAATGTTTGTGTCAAAACCggcaaaaacaacatttttaagagCGTGAAAAAACTACACTTCGCAGAGACATAATTCAAAATGACTGCAACAAAGCAAGGCTAGGATACGAGTTTTCATTCTGCCGAGAgttgatgtttaaatgtatagtaaACAGCTGTGCTTTTTCAGTCACTTCCTGCCTGTGGCCCAAGCTCTGTGTGTTTGGTGCTCAGCGATGTTTTAATGTAACTTCCTAAGTGTTAATATGTCATTGAAATAAAACGTTTCTTCCACGTACAAGTTTCACGAGGAGGTTCTGGTAGTGCTGTTTAAAGCGGAAAGCTGAGGTTGCTTTGGGTGGTTCAACCTGGGAAGGAGTTCTTCTGACCCATAAATGGTCTGATGTTAATCATGTGAACAAATCCATTAACCACTATGTTGAGTAGAGCTTTTAGAGAGAAACCCTTTTGCACTTGACACCTGgccttaataataatgataaagagACGAACTATAAAGCTTTGAGAAGTGACTACAGTGCTTGGGCTGGCGGTTCTTTCATTTGTGGTGCTTGTTACTGGTTGACTAAATGGAAGCACAGGTCCAATCCAAGATGAGCGAAATGGAAGTATTCTTGAAATCTGTTAGGTATCAcgggtgattttatttttttatatataaatgaaatcaAGTGTTAGAAATGAACGATGCCTCCgtttaaaattgttttgcaAATTGCAGATTCTGCAGTCTGGTGCAAACCGAATGACGTTTGAAACTATTTCtgtaacagattttattttatttttggcaaaaCTGTGTAAGGAGAGAAAagtaaaagtagtttttttgaGTTA

Function

GO: NA

KEGG:

id description
K17534 MLK4, KIAA1804; mitogen-activated protein kinase kinase kinase MLK4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199310 lncRNA downstream 6922 6187771 ~ 6191513 (-) True G158302
TU199268 lncRNA downstream 196814 6001399 ~ 6001621 (-) True G158262
TU199264 lncRNA downstream 197377 5998127 ~ 6001058 (-) True G158260
TU199251 lncRNA downstream 276513 5920716 ~ 5921922 (-) True G158247
TU199249 lncRNA downstream 278724 5917800 ~ 5919711 (-) True G158245
TU199339 lncRNA upstream 39492 6263223 ~ 6263983 (-) True G158326
TU199341 lncRNA upstream 134518 6358249 ~ 6358666 (-) True G158328
TU199385 lncRNA upstream 282582 6506313 ~ 6506516 (-) True G158362
TU199429 lncRNA upstream 369377 6593108 ~ 6595545 (-) True G158401
TU199444 lncRNA upstream 512375 6736106 ~ 6736901 (-) True G158415
AMCG00001503 mRNA downstream 44085 6153766 ~ 6154350 (-) True AMCG00001503
AMCG00001499 mRNA downstream 165911 6018704 ~ 6032524 (-) True AMCG00001499
AMCG00001496 mRNA downstream 247730 5948974 ~ 5950705 (-) True AMCG00001496
AMCG00001494 mRNA downstream 249750 5924563 ~ 5948685 (-) True AMCG00001494
AMCG00001495 mRNA downstream 284078 5911652 ~ 5914357 (-) True AMCG00001495
AMCG00001504 mRNA upstream 41798 6265529 ~ 6266399 (-) True AMCG00001504
AMCG00001505 mRNA upstream 185937 6409668 ~ 6419886 (-) True AMCG00001505
AMCG00001506 mRNA upstream 199121 6422852 ~ 6446964 (-) True AMCG00001506
AMCG00001514 mRNA upstream 284144 6507875 ~ 6509704 (-) True AMCG00001514
AMCG00001513 mRNA upstream 294357 6518088 ~ 6535716 (-) True AMCG00001513
TU199232 other downstream 317780 5880184 ~ 5880655 (-) False AMCG00001491
TU199208 other downstream 600596 5595384 ~ 5597839 (-) True G158207
TU199135 other downstream 754854 5442857 ~ 5443581 (-) False AMCG00001483
TU199111 other downstream 780192 5377430 ~ 5418243 (-) True G158123
TU199110 other downstream 818476 5377430 ~ 5379959 (-) False G158123
TU199388 other upstream 284208 6507939 ~ 6509683 (-) False AMCG00001514
TU199465 other upstream 551876 6775607 ~ 6776658 (-) False G158434
TU199466 other upstream 551876 6775607 ~ 6776658 (-) False G158434
TU199737 other upstream 1438360 7662091 ~ 7664572 (-) True AMCG00001554
TU200134 other upstream 2290636 8514367 ~ 8540258 (-) True G158971

Expression Profile