AMCG00001513


Basic Information

Item Value
gene id AMCG00001513
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6518088 ~ 6535716 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001513
CTGACATGCAGGTCCTCGGCGGCAGGTGCCTCTGTCTCAACCCCATCTCGCACAGGTAGCCCTCGGGAAGGTCGCACTGCCGTCGCCCTCTTGCTTTAACCCGCCGCCAGGATGCCCTACTCGTACGAATCCCCCCGCAGCGGCGGAGGGTCCGAGCCGGTGAAGTCCCGGAGCACCCAGTCGGACGGGAAGAGCTTCGAGCAGCTGCGCCGGGAGTGTCTGCAGAGAAACGTGCTCTTCGAGGACCCCGACTTCCCCGCCACCGGCAAGTCGCTCTACTACAGCCAGCAGGTCCCCGTCAACATCGTGTGGAAGAGACCCGGGGAATTTCAACCAAATCCAAAGTTTGTCATTGGTGGAGCGACCCGGACTGACATTTGCCAAGGAGAATTAGGTGACTGCTGGTTGCTGGCAGCTATTGCCTCACTCACACTTAATGAAAAGGTACTGATGCAGGTGGTGCCCCACGACCAGACCTTCGATCAAAACTACGCAGGCATATTTCACTTTCAGTTCTGGCAGCACAATGAGTGGTTGGATGTCATCGTAGACGACAAGCTGCCCACCGTCAGGAATCGCCTGGTGTTTCTACACTCGGCTGAAAGCAACGACACTCTGGAAGCCATGGAGGATTTCACTGGTGGAGTGGGGGAGATATATGAGACCAAACAGGCCCCCAATAACCTCTTCCAAATCATGGGAAAGGCTCTTCAAAGGGGCTCTATGATGGGCTGCTCTATTGATATCACAAGCTCGGCAGAATCTGAAGCTCGGACAACGACAGGCCTGGTGAAGGGCCACGCCTACTCAATAACTGGACTTGATGAGGTACAAGTCAGAGGGAGAAAGGTACAGCTGATCCGAATCAGGAACCCTTGGGGACAGGTGGAGTGGAATGGTCCTTGGAGTGACAACTCCAGGGAATGGAGTATGATCTCTGCTCAAGACCAGAAACGACTTAACCAAGTAACTATGGATGATGGTGAATTCTGGATGGACTTTGAGGACTTCAAAACCAACTACGATAAGATAGAAATCTGCAATCTGACTGCAGACTCCTTGGATGATGATATCACTCACAAATGGGAAGTGGCAACTTTTGAAGGAAACTGGGTGCGAGGATCCACTGCAGGGGGCTGTCGAAATTTCATTGatacattttGGACGAACCCACAGTTCAAGCTGAAGCTGAAGGACACAGATGACCATCACGACAAGTGCACATTCATTGCCGCTTTGATGCAGAAGAACCGACGCAAACTGCGCAAAGAGGGGCTTGACCTGGAGACAATTGGATTCGCTATTTACCAGGCCCCTAATGAGGAAGATCATCTTTCGAAAGACTTTTTCCGCTACAACCCGTCCAAAGCCCGGAGCAAGACCTACATCAACGTGAGGGAGATCTCGGAGCGCTTCACACTTCCTCCTGGAAACTACCTCCTCGTACCTACTACCTTTCAACCTCACAAAGAGGCAGACTTTCTTCTGAGGATCTTCTCTGAAAAGCAGGCAGAGTCTTTGGAGATGGGCAATACAATTGAGGCGGCACTTCCTGATCCGCCCATGCCAAGCCCTCCTGCGGAGgaaagtgaagaagaaaaaggactGAGGAGACTGTTCAATCAGATTGCAGGCTCGGACATGGCCATCAGTGCCAAAGAACTGCAAATTGTACTAAATGGTGTGCTGAAGAGACGAAAGGAGATCAAATTTGATGGCCTGAGTATTAACACCTGCCACAGCATTATCAATTTAATGGATGCAGACAACTCTGGACAGCTCGAGTTCCAGGAGTTTAAAATCTTCTGGGATAAGTTAAAGAAGTGGATCATGTTGTTCCTGACGCATGACACGGACAGAACCGGCAGCATGTCGTCCTACGAACTGAGAACAGCTCTCAAGGCAGCAGGAATTCAACTCAACAACAAAATGCTGCAGTTGCTGGCCTTGAGATTTGCCGATTCGAGATGCGACCTAAGCTTTGATGACTACCTCGCTTGCATTGTGCGCCTGGAAAACATGTTCAGAGTTTTTCAGGCACTCGACCAAGACAATACAGGAGACATCTCGATGAATTTCCAGCAGTTCCTGTACTTGACCATGAATATGTGAAAGCAGTAAGAAGAACAGAGAAGTATGCCCCCgaatgaaacacaaaaaaagtttaTCCCGTAAACTCACTGATTTTAGTGGACACTTGGAGAAGGTTTGCAATGCTTTGGGCACTGGAGAATTTCCTGGCACAATAATGCGTACATGGTTGCAGCAGTGGTGAACGGACACACGGATGGTTTCTGGTCCcactctgtttttaatttttaattaacatttaatgtaaagtgtCCTTCAATGTTAACTGTTTACACTGAAGATATCAAAAGACCAAGATTGAAAGAATGGTGCGCTCTGGGTAATTTTGCATGTAACTCTTCTTTGGATTAAGGAAACAATGTTAATTGGAAGGCCATATAATGATTGTTTGAGGCTTTAGGAAACTTGCAATTCATCTACAAGGGAACAGCATATTTTTATAAAGTGCAGCAATATTGAACTAGCTTACCAAAAGAGACTAAAGTTGTTGAGTTTTGGAATGATTTAAACTAGATGAGCATACAAAGTCTAGTTCACACTGCCATCACTGGCTTACTCATTTATTCATAGGCCATTTTGTGTGTCTACCTAtctattgtttaaaatgatctgCTTTAACTCTTCTTCAAAATGCATGCTTTACATTGTTTTGGGCTCCAacgtataatataataattgtattttgaaacttTTTTGTGTAAATAGAACCCATACTGTGATACCCAGAAGTTTGACCAAAAGGATTTTACTTCTGATCCTTTGGAGACCAATCTTATGAGTGGGGTTAAGGTGTGACATCTGTTATGTGGTATCTTTCTTATCAATGTATCAGTGGAAGGGATTTTAACGGGTATAATGccaaataacatgtttttttggttgttcgAATAGACTTCAATTAGAATGATTTGCTTAGGACTGGGGCTGATTAATCTGCCCTTGACATGGCATTATCAGTGTGATATGTTTCTGTCGTTTTCTATTAAATCAGTAACATGTTTTATCTGGCttcatttgttaaatatttgtgcAATTGTTTGTGGGGGTGTGGTCGTGGAATTTGGAGGGTTGGGGCCTTCAAGATCACCTTGCTGATTCACTGTGCTTCGGCTGCAGAGAGAAGAGTATACTCACTCACcactttttcttaatttgcCACCTGCAGTTCAATTGTTTGGGGCAATTTGAAATCCCCTTTTAATAAAGTTGTGTGGgcttttcaaattcattgttCCTGCCCTGTGgaatgaaaacaggaaacaggaggTGTTAATGCTGAGGATTCTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08578 CAPN9; calpain-9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001513 True 3378 mRNA 0.46 20 6518088 6535716

Neighbor

gene id symbol gene type direction distance location
AMCG00001506 phactr2 coding downstream 71124 6422852 ~ 6446964 (-)
AMCG00001505 NA coding downstream 98202 6409668 ~ 6419886 (-)
AMCG00001504 NA coding downstream 251689 6265529 ~ 6266399 (-)
AMCG00001502 NA coding downstream 294357 6198435 ~ 6223731 (-)
AMCG00001503 NA coding downstream 363738 6153766 ~ 6154350 (-)
AMCG00001508 NA coding upstream 11298 6547014 ~ 6561210 (-)
AMCG00001521 galnt2,LOC107725470,LOC106589660,LOC107743534,LOC107676591,LOC107666462 coding upstream 69793 6605509 ~ 6643189 (-)
AMCG00001520 NA coding upstream 181317 6717033 ~ 6736026 (-)
AMCG00001526 rab4a,LOC107601855,LOC107666448 coding upstream 255818 6791534 ~ 6798358 (-)
AMCG00001524 NA coding upstream 300993 6836709 ~ 6840554 (-)
G158362 NA non-coding downstream 11572 6506313 ~ 6506516 (-)
G158328 NA non-coding downstream 159422 6358249 ~ 6358666 (-)
G158326 NA non-coding downstream 254105 6263223 ~ 6263983 (-)
G158302 NA non-coding downstream 326575 6187771 ~ 6191513 (-)
G158262 NA non-coding downstream 516467 6001399 ~ 6001621 (-)
G158401 NA non-coding upstream 57392 6593108 ~ 6595545 (-)
G158415 NA non-coding upstream 200390 6736106 ~ 6736901 (-)
G158424 NA non-coding upstream 217980 6753696 ~ 6753960 (-)
G158425 NA non-coding upstream 221199 6756915 ~ 6757129 (-)
G158426 NA non-coding upstream 226761 6762477 ~ 6762699 (-)
AMCG00001514 NA other downstream 8384 6507875 ~ 6509704 (-)
AMCG00001491 NA other downstream 635768 5880184 ~ 5882320 (-)
AMCG00001487 NA other downstream 771763 5657962 ~ 5746325 (-)
G158207 NA other downstream 920249 5595384 ~ 5597839 (-)
AMCG00001483 NA other downstream 1074507 5441627 ~ 5443581 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other upstream 236622 6772338 ~ 6776658 (-)
AMCG00001554 NA other upstream 1126375 7662091 ~ 7664572 (-)
AMCG00001557 NA other upstream 1255665 7791381 ~ 7795966 (-)
AMCG00001594 NA other upstream 1556612 8092328 ~ 8095726 (-)
AMCG00001583 ggps1,LOC107728322 other upstream 1689853 8225569 ~ 8252204 (-)

Expression


Co-expression Network