RNA id: TU199251


Basic Information

Item Value
RNA id TU199251
length 1207
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G158247
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5920716 ~ 5921922 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttttaataaacagagaGGTATTGGAAGGTGAATGTTTTAGTAACACTTTCATTTGACATGTCTTAAACAGCCTGTGGATATCTAATCTGTTGCACCTGATGTCTTTTTAAAGgtgtattgcattttaaccTTGACAGTTAGTGGGAAGGAAGCAggtttaaaaccacaataattGATTGTAGCTTACTTTTCAGGATTAAACTGACCTGCAAAAATAGACATTTCGATTAGGCTGATCCTTAGTTCATTGCTAAGTCAATATCTCCTGTAATTAATTATCAGTTCACATTTGGAGTACCTAAATATGTTGCAACCTCCTAGGTAAGAGTTTATGGCACTTCGACAAATgaggacttttatttttatattaaacacacattgtCCACTCGAGTCTTCACTTACTATTTAACCTTTCCATTTAATGCAGTAATTAGCATGTTTTCGAAGTACATGGTACAGTAGCAACTTACTGACAGCAAGAAAAATGTGGGATAGGAgatgtaaaataaactgcattcatgtctgcattcaaaatatgaatgtaatgttttttcctgaaatgctatttgtatatattttaattaatgatgtttgtcttttgtttctctgttgttttattgtccGTCCCCTCGTCTCCTCCcagtatttattgtgtgtttgccAGTCAAATGTTTGCGTGAATCTTAATGATTAGTCCTGTATTCAGCCATCACCTTTCaatcttctgttttctttaatcAAAGGACCAAAGATTTGGCGATGTGAGAAAGtgatgtttgtttgatttatttattcatctattcatttatttagttaaatcCTGTGTTTAAAAAGCTTCGTACAGATTTATGCCATAGATCTGGAACCCATTGAATAATCTACCTTGCTGTTTAAAGTGATCACTGTTTTCACACACTTTTATCTGTATTAacgtattaatttatttcagtgctgctttagaagaatttaaaattaattattgtgtCACTGGTTATtgagcagtttatttatttatttaatgcacaaAGGCTGAACTATTTTAGTTGCTTCCTTTTAGGGGGAATTAACTGTGAAGTCATATAATCAGTTTTTGTTGGGCAACTATCAGCAattctttttcctgtttttccattGAAGTTGACTATCATTAAACATTACTTGTGGGTTTCATAGATATGTGTCTTATACATATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199249 lncRNA downstream 1005 5917800 ~ 5919711 (-) True G158245
TU199242 lncRNA downstream 11707 5904550 ~ 5909009 (-) True G158238
TU199226 lncRNA downstream 92927 5827496 ~ 5827789 (-) True G158222
TU199216 lncRNA downstream 259502 5659764 ~ 5661214 (-) False AMCG00001487
TU198989 lncRNA downstream 985843 4914789 ~ 4934873 (-) True G158017
TU199264 lncRNA upstream 76205 5998127 ~ 6001058 (-) True G158260
TU199268 lncRNA upstream 79477 6001399 ~ 6001621 (-) True G158262
TU199310 lncRNA upstream 265849 6187771 ~ 6191513 (-) True G158302
TU199339 lncRNA upstream 341301 6263223 ~ 6263983 (-) True G158326
TU199341 lncRNA upstream 436327 6358249 ~ 6358666 (-) True G158328
AMCG00001495 mRNA downstream 6359 5911652 ~ 5914357 (-) True AMCG00001495
AMCG00001491 mRNA downstream 38396 5880208 ~ 5882320 (-) True AMCG00001491
AMCG00001492 mRNA downstream 50451 5822745 ~ 5870265 (-) True AMCG00001492
AMCG00001490 mRNA downstream 119757 5755035 ~ 5800959 (-) True AMCG00001490
AMCG00001487 mRNA downstream 174391 5657962 ~ 5746325 (-) True AMCG00001487
AMCG00001494 mRNA upstream 2641 5924563 ~ 5948685 (-) True AMCG00001494
AMCG00001496 mRNA upstream 27052 5948974 ~ 5950705 (-) True AMCG00001496
AMCG00001499 mRNA upstream 96782 6018704 ~ 6032524 (-) True AMCG00001499
AMCG00001503 mRNA upstream 231844 6153766 ~ 6154350 (-) True AMCG00001503
AMCG00001502 mRNA upstream 276513 6198435 ~ 6223731 (-) True AMCG00001502
TU199232 other downstream 40061 5880184 ~ 5880655 (-) False AMCG00001491
TU199208 other downstream 322877 5595384 ~ 5597839 (-) True G158207
TU199135 other downstream 477135 5442857 ~ 5443581 (-) False AMCG00001483
TU199111 other downstream 502473 5377430 ~ 5418243 (-) True G158123
TU199110 other downstream 540757 5377430 ~ 5379959 (-) False G158123
TU199388 other upstream 586017 6507939 ~ 6509683 (-) False AMCG00001514
TU199465 other upstream 853685 6775607 ~ 6776658 (-) False G158434
TU199466 other upstream 853685 6775607 ~ 6776658 (-) False G158434
TU199737 other upstream 1740169 7662091 ~ 7664572 (-) True AMCG00001554
TU200134 other upstream 2592445 8514367 ~ 8540258 (-) True G158971

Expression Profile