G158971 (map1lc3c,LOC107701141)


Basic Information

Item Value
gene id G158971
gene name map1lc3c,LOC107701141
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8514367 ~ 8540258 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU200134
ATAGCAGATGCACAGTTTCTGTTTTGGGATTAATGAAACCATTTGGAGTTGAGATACAGTAAGGTTCATATAGTATATCTGGTCGGAGACAATTTTGTTAAGAAAGAGGTGCATGTTTTGGGAAGTACGTTTTTTGAGATGGCAGACGATGAGGACGATTATATGTCTGACGCGTTCCTTAATAAAATGCAGGATGTGAGGCCAGGCGTCCCCATGGTGCGACGGGCGAAGGTGgaaaagaagaaggaagagCAGCACAAGGAGAAGAACATAAAGAACAGACAGAAGAGCTTCAAGGAGCAGGAGACGGAGAGCAGGGAGGCCAGGCTGCAGAGCTCGCTTGGCAATGAAAACAAGGGCTTTGCGCTGCTGCAAAAGATGGGCTACAAAGCAGGTCAGGGACTGGGCAAACAAGGTGCAGGCAGAGTTGAACCTATTCCACTGAACATTAAAACAGATCGAGGTGGAATCGGGATGGAAGAagtgGACAGAGCCGCAGCGGGCAAATACGAGGCTTGTGCGGCGGAGAAAGAGCAGCTCGcctacaaaacaatacataaattaataaataaatagtcatgcCTCCTTTGGAGAAAAGCCAGCACGCCAAGCCGTTCAAGATGAGGAAAAGCTTGGCGACACGGATGGAAGAAGTGGCCGGGATCCGGTCGAAATTCCCAACTAAGATCCCAGTGATCGTTGAGCGCTACCAACGGGAGCGGTACCTCCCTGCGCTGGACAAGACCAAGTTCCTGGTCCCGCAAGAGCTCACCATGACCCAGTTCATTACCATCATTAGAAACCGGATGTCTCTCATGCCAAGTCAAGCGTTTTACCTGCTGGTGAACAACAACAGCCTGGCCAGCATGTCTCTCACCATGTCGGAGGTGTACAAGGACCATAAGGACGAAGATGGCTTTCTCTACATGACCTACGCCTCTCAGGAGATGTTTGGCTCTTCTGCTGCCCTTGCCAGCTGTGCCTCCATGCTGGCCGTGCGGTGAGGTCTCTAGTCCACTTTCTTTCCCTTGTCCAGTTGGACGACCACAACAATGCAGAGGACTTTTATTATTGCCCGTGAATTGGCAGGTCCAAATGGTGGCACAGGCGTACAGACTATaacttcatttgtatttatgtatttttattgaatatttttgTACTTGATGAGCAAACCTTATTTGTCTGTCCTTTTTCTCCTATTTTTACGGTCAGTGTTGACCagtgtgtgaaaataattaataaagcttGTATCATTCTGGAAGTGCCTGGACTCTACTTGCAAACAGGCTTTTTCCAGACCTTATCCTTTTTAATCTAAAGGATTAATCCCCATTTAAATGGATGTTCAAGGGTAGCCGTTTATTGTATACATGTTGCCGATGCTTAAGCATGGCCATAAACTTGCACAAATTGTATGTAATAAAATTTAGATTTTACACTTGCACCCAATTTATTCATTGGATGCCTCTAGCCCGTGACTTTGTTCCAAGA

Function

symbol description
map1lc3c Predicted to enable microtubule binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to human MAP1LC3C (microtubule associated protein 1 light chain 3 gamma).

NR:

description
PREDICTED: microtubule-associated proteins 1A/1B light chain 3C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200134 True 1494 TUCP 0.46 8 8514367 8540258

Neighbor

gene id symbol gene type direction distance location
AMCG00001584 NA coding downstream 291185 8217777 ~ 8223182 (-)
AMCG00001596 NA coding downstream 337987 8168846 ~ 8176380 (-)
AMCG00001595 NA coding downstream 351572 8161044 ~ 8162795 (-)
AMCG00001593 mrpl14,LOC107679189,LOC107549148 coding downstream 410810 8101524 ~ 8103557 (-)
AMCG00001569 NA coding downstream 466401 8018604 ~ 8047966 (-)
AMCG00001601 NA coding upstream 94161 8634419 ~ 8651786 (-)
AMCG00001609 NA coding upstream 130752 8671010 ~ 8686429 (-)
AMCG00001607 NA coding upstream 172827 8713085 ~ 8736663 (-)
AMCG00001608 psen2 coding upstream 200124 8740382 ~ 8746858 (-)
AMCG00001611 NA coding upstream 234417 8774675 ~ 8776890 (-)
G158976 NA non-coding downstream 18804 8495290 ~ 8495563 (-)
G158975 NA non-coding downstream 19136 8494945 ~ 8495231 (-)
G158974 NA non-coding downstream 19508 8494501 ~ 8494859 (-)
G158973 NA non-coding downstream 21666 8492020 ~ 8492701 (-)
G158943 NA non-coding downstream 62197 8447970 ~ 8452170 (-)
G159039 NA non-coding upstream 215861 8756119 ~ 8757944 (-)
G159134 ndufaf5 non-coding upstream 681308 9221566 ~ 9223239 (-)
G159183 NA non-coding upstream 1323530 9863788 ~ 9868342 (-)
G159188 snrpb2,LOC107594438,LOC107684252 non-coding upstream 1429117 9969375 ~ 9970316 (-)
G159196 pcsk2,LOC107561970 non-coding upstream 1477520 10017778 ~ 10031225 (-)
AMCG00001583 ggps1,LOC107728322 other downstream 262163 8225569 ~ 8252204 (-)
AMCG00001594 NA other downstream 418641 8092328 ~ 8095726 (-)
AMCG00001557 NA other downstream 718401 7791381 ~ 7795966 (-)
AMCG00001554 NA other downstream 849795 7662091 ~ 7664572 (-)
G158434 actc1a,acta2,LOC103359577,LOC105907633,LOC103457336,LOC107756589,LOC107594158,LOC103374497 other downstream 1737709 6772338 ~ 6776658 (-)
AMCG00001615 NA other upstream 533831 9074089 ~ 9103034 (-)
AMCG00001625 NA other upstream 1412114 9952372 ~ 9965408 (-)
AMCG00001628 NA other upstream 1672616 10212874 ~ 10221718 (-)
G159303 NA other upstream 2130179 10670437 ~ 10671241 (-)
AMCG00001702 NA other upstream 4390973 12931231 ~ 12937243 (-)

Expression


Co-expression Network