RNA id: AMCG00001423


Basic Information

Item Value
RNA id AMCG00001423
length 3438
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00001423
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3589190 ~ 3599457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCTGGCCCTTCGCAGATCAGCAACCAGGAAGTGAGGCttgtttgctttccttttttcaccaATCCCTCTCCTTTTCTGTGCGCGAGAGACAGCGTTCGGCTCAGGCAGCGGGAGGCACAGACCGGGACAGGGCAAACAGGTCGAGACAGGGAAAGAGCACAAGAGGGTAAGAAGTAGAAGGAGAAGGGGgagttggggagggggggggatgGATGCAGTGCTAAGGGACCTCCAGAGGAACGAGTCCGTACCACCTCCCACCCTGAGCCCAGCTGTACCCCCGTTCGTGAAGCTGGGCCTGACCATCGCCTACACCATCTTCTACTCGTTGCTCTTTGTCTTCATCTACGTACAGCTCTGGCTCATCCTCCACTACCGACACAAGCGCTTCAGCTACCAGACTGTGTTCCTGTTCCTCTGCCTGCTATGGGCAGCACTGCGGACCGTGCTCTTCTCCTTCTACTTCAGGAACTTTGTGACAGCCAACTCCCTCAGTCCCTTCACCTTCTGGCTGCTCTACTGCTTCCCCGTGTGTCTTCAGTTCTTCACTCTCAGCCTGATGAATCTCTACTTCGCCCAGGTTATCTTCAAGGCTAAATCCAAGTACGTCCCAGAGCTCCTGAAATACAGGTTGCCTCTGTACTTGGTCTTCGTGTCCATCAGTCTAGTTTTCCTGGCGGTGAACCTGACCTGCGCTCTCCTGGTGAAGATGACCAGCACAGATGTGAAGACCATCGTCTTGGTGCGGGTGACAATCAACGACACCCTCTTCGTCCTTtgcgctgtctctctctctctgtgcctctaCAAAATCGCCAAGATGTCCTTAGCAAACATCTACCTGGAGTCTAAGGGAACGTCAGTTTGCCAGGTGACAATAATAGGAGTGACTGTCATTTTACTCTATACATCCCGAGCATGTTACAACCTGGTTGTGCTGGGTCTCGCCAACTACAAAAGCATCAACTCCTTCGACTATGACTGGTACAACGTTTCAGACCAGGCCGACTTGAAGTCCACACTGGGTGATGCTGGGTATATCGTGTTTGGAGTGATCCTCTTTGTATGGGAGCTGCTCCCCACTTCACTCGTGGTTTTCTTCTTCAGAGTCCGCAGACCGGCACAGGACAGAAGCGGATCTGGCATTCCTGGCCACGTCTTCTCCTCCAGGGCTTACTTCTTCGACAACCCCCGACGTTACGACAGTGATGACGATCTGGCCTGGAACATTCTTCCACAGAACGTCCAGGCCAACCTCACAGCAGAGTATTACGACTGGGGAAGCAGAAGCGGCAGCTTTGTGGCCTATATAGGATCGGAGGAGCTGGAGTCGGCCACTGCTCCAGAAGAACTCAACCCATACTGAAGACAGGCTACGTGCCCTGCGTGCGTTCACATGCATCCACCAGTCGCTGTGGAAGTCTGAAGGGCTTCGGGACTTATCAAAACATGCTAGAagggttggaacaaaaatatatatatttctgcataCCAGACAcaataaaagacagaaatggAAGAAAGACACTGAAGGATCTCCAGGTTCCCCCAGCCAAGCTTAAAAATGCTACATTATCAATAATGTAGTGTAAATGTCGGTCTGCTGCATCACACAAGTTGCAAACCAAAGGGAAATAATACTCTGTTAAATTAATCTTTCAAATGTGAACAAAGAGCTCCAATAGAATGCCCTTTGACCTTTAATCCAGCTGGGAGAAAGGAAGCACGCAAATTCTGGAGGAAATGCGAAAGAAAAAAACGTATCATTAACAgagtaaaaggaaaatatttgaggcctgtgaatttaaatatgaaaaggaCCAACGACAACACAAATACAAgcaactatttattttgctaagAATGTAATCAGTTTAATGAAGTGATAAATTTAGTACAGAGAAGCAGATGTTACAGTTAGAGAGTTCTTCTATGAATATTAAACAGTACCACAATCCGTCATTTCACAATGCTTTTGCATGAGCATGAGATTAGGCACAGTTTTTGGAAAGCACCttagaatatttttaattggagtTTTTGGAAAACACCAAAACATTTCCAATtggatttaaacaaacaaaataaactgcttaCCTCTCATGGCGAAGAAACCTTGCTGACAAAGGTATTCGGATACTGTACCTGTGCAAACATTGACCTTAAACATTTACTCATCCCTGTGTCTGTGCAAATGACCTGAAAAAGGTCTATCCATGTcctttgaaactgaaatatcatgTAAACATAGAAAACTACATCACATTCAGGTCAGTTCTTACTACAGTAGTTTTTCACAAGATttgacttcatttaaaaatgtactgtatgaaTAAAATAGTGTTGGGGGTACTTTAATTGAAATAGATAgtttaaatagattaatttatcTGACACAGTAGGACTGCAGGTCAGGCCTAAATACAATACCCACCTTGATAGACCTAGGTAGTGACTGTAATgaccaatacacacacaaagtgaaGGGCATGCCCTGcttttaaatagattaaaacacAGTGTAAACCCTCCAAAGTCTGTGTAATTGTTACAAATATCCTTAAAACAGTACATAGGTCACCCATATTTCCCCCGTCGTCACTTTCATTTGTAGCACTGTCGGTACCCTGTCAAATTTCAAACCTTTCAAGTTAAAAATAAGTGCATTCCCCTTCACTCCAACTGGAATGTGTCCTTGATGCTGCTGTCTGAGGGACATTACTGGCAGCGGGAGAAATGCCAACTGGGGGCACTTCCATTGCATTAAAGCTGACAGATATGAATGATCATTACACCTTAAAGAGCATTAAAAATGTCTCAGGATGCAAGGACTGACATGGACATTTACACACAAGTCTCCTAGAGAATTCTAGAGACAGCTGGTTATATgcaactgtacattttaacCCCTGCTtcttgtgcttttaaataagcAATCTAGACAACACTGAGGACAAGTTCCTCATTAGACTGCAGACTAAGGAGTGGACTGATAGCAATGGGACAAGGAGCCAAGGAAGAACGGTTGAAAAAGGTGCTGGATTTACCACTAATCCCATTGGTCGCAGACCTTAAAACCCCAAACAATTAATCTTTAGGGAGCAATATTAATCTGGTAGTTGTCTACTGTGGTAACTCATAGCCAGCTTTGCAAAGACCGGACATCCTCAACTAGACCCGTGCCTACAGCAATTAGAGAAGGGAAGgcaacttgtatttattattattattgatgagaTGTGCTATCTGTGGTAAACTTATTGTTATATGTTCATTTTCTGAAcgtaagttttctttttttgtaaacataaaaaaaaaaaaacctaaacatttTAACGTCACATTTTTGttagcgttttttttttttttttttaaaccggTGGCTCCTGGTTCACACTGGGCCAGAGCCATGAATAAAGAGCACTTTGTAGAAAAA

Function

GO: NA

KEGG:

id description
K22989 GPR137; integral membrane protein GPR137

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198589 lncRNA downstream 23693 3555480 ~ 3565497 (-) True G157696
TU198582 lncRNA downstream 67482 3519097 ~ 3521708 (-) True AMCG00001416
TU198569 lncRNA downstream 82698 3506280 ~ 3506492 (-) True G157680
TU198548 lncRNA downstream 111596 3475624 ~ 3477594 (-) True G157664
TU198530 lncRNA downstream 146837 3436345 ~ 3442353 (-) True G157646
TU198665 lncRNA upstream 170329 3769786 ~ 3771883 (-) True G157763
TU198682 lncRNA upstream 275153 3874610 ~ 3874832 (-) True G157778
TU198698 lncRNA upstream 282383 3881840 ~ 3917086 (-) False G157789
TU198700 lncRNA upstream 282910 3882367 ~ 3896079 (-) True AMCG00001426
TU198699 lncRNA upstream 287342 3886799 ~ 3917086 (-) True G157789
AMCG00001416 mRNA downstream 68918 3518875 ~ 3520272 (-) False AMCG00001416
AMCG00001418 mRNA downstream 80639 3507876 ~ 3508551 (-) True AMCG00001418
AMCG00001419 mRNA downstream 81357 3491994 ~ 3507833 (-) True AMCG00001419
AMCG00001417 mRNA downstream 99070 3489094 ~ 3490120 (-) True AMCG00001417
AMCG00001414 mRNA downstream 311359 3276244 ~ 3277831 (-) True AMCG00001414
AMCG00001424 mRNA upstream 180105 3779562 ~ 3801485 (-) True AMCG00001424
AMCG00001425 mRNA upstream 225994 3825451 ~ 3842631 (-) True AMCG00001425
AMCG00001426 mRNA upstream 274581 3874038 ~ 3888415 (-) False AMCG00001426
AMCG00001442 mRNA upstream 604474 4203931 ~ 4226910 (-) True AMCG00001442
AMCG00001449 mRNA upstream 771068 4370525 ~ 4371684 (-) True AMCG00001449
TU198559 other downstream 96480 3489767 ~ 3492710 (-) True G157671
TU198465 other downstream 329235 3222677 ~ 3259955 (-) True G157593
TU198157 other downstream 1800348 1750051 ~ 1788842 (-) False G157339
TU199110 other upstream 1777973 5377430 ~ 5379959 (-) False G158123
TU199111 other upstream 1777973 5377430 ~ 5418243 (-) True G158123
TU199135 other upstream 1843400 5442857 ~ 5443581 (-) False AMCG00001483
TU199208 other upstream 1995927 5595384 ~ 5597839 (-) True G158207
TU199232 other upstream 2280727 5880184 ~ 5880655 (-) False AMCG00001491

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_01747067_01755038.mRNA True 1425 mRNA 0.50 8 CI01180000 1747067 ~ 1755257 (+)