RNA id: AMCG00001418


Basic Information

Item Value
RNA id AMCG00001418
length 495
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00001418
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3507876 ~ 3508551 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCAGGAATATGTGGAAGCAGTGTCTTTCCAACACTTCATCAAGGAACGTGCATTGATCAGCCTGGAAGAGATCAATAAGAAGCTAGTATTTGTCAAAGATGACAAAGAAGATGAGGGTCCCTCACCTGAGTCCCAGGAGACAGAGGTGGCCACGGTGTGTTTCCAGGTGAGTCCCACCGACTACCTCCTGGGCATCGCGGACCTGACCGGGGAGCTGATGCGCATGTGTATCACCAGCGTGGGGAACGGGGACATTGACACCCCCTTCCAGCTCAGCCAGTTCCTGAGACAGATCTACGATGGCTTCTCCTACATCGGCAACACGGGCCCATACGAGGTCTCCAAGAAGCTGTACACCCTGAAGCAGAGTCTGGGGAAAGTGGAGGACGCCTGTTACACCCTGAAGGTCCGGGGCTCTGAGATCCCCAAACACATGCTGGCTGACGTCTTCTCTTCAAGGGCTACCCTGATGGAGCCAGATGAGGGCATTTCT

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198569 lncRNA downstream 1384 3506280 ~ 3506492 (-) True G157680
TU198548 lncRNA downstream 30282 3475624 ~ 3477594 (-) True G157664
TU198530 lncRNA downstream 65523 3436345 ~ 3442353 (-) True G157646
TU198531 lncRNA downstream 93628 3411637 ~ 3414248 (-) True G157647
TU198510 lncRNA downstream 109857 3394245 ~ 3398019 (-) True G157633
TU198582 lncRNA upstream 10546 3519097 ~ 3521708 (-) True AMCG00001416
TU198589 lncRNA upstream 46929 3555480 ~ 3565497 (-) True G157696
TU198665 lncRNA upstream 261235 3769786 ~ 3771883 (-) True G157763
TU198682 lncRNA upstream 366059 3874610 ~ 3874832 (-) True G157778
TU198698 lncRNA upstream 373289 3881840 ~ 3917086 (-) False G157789
AMCG00001419 mRNA downstream 43 3491994 ~ 3507833 (-) True AMCG00001419
AMCG00001417 mRNA downstream 17756 3489094 ~ 3490120 (-) True AMCG00001417
AMCG00001414 mRNA downstream 230045 3276244 ~ 3277831 (-) True AMCG00001414
AMCG00001412 mRNA downstream 232261 3268997 ~ 3275615 (-) True AMCG00001412
AMCG00001413 mRNA downstream 312048 3188173 ~ 3195828 (-) True AMCG00001413
AMCG00001416 mRNA upstream 10324 3518875 ~ 3520272 (-) False AMCG00001416
AMCG00001423 mRNA upstream 80639 3589190 ~ 3599457 (-) True AMCG00001423
AMCG00001424 mRNA upstream 271011 3779562 ~ 3801485 (-) True AMCG00001424
AMCG00001425 mRNA upstream 316900 3825451 ~ 3842631 (-) True AMCG00001425
AMCG00001426 mRNA upstream 365487 3874038 ~ 3888415 (-) False AMCG00001426
TU198559 other downstream 15166 3489767 ~ 3492710 (-) True G157671
TU198465 other downstream 247921 3222677 ~ 3259955 (-) True G157593
TU198157 other downstream 1719034 1750051 ~ 1788842 (-) False G157339
TU199110 other upstream 1868879 5377430 ~ 5379959 (-) False G158123
TU199111 other upstream 1868879 5377430 ~ 5418243 (-) True G158123
TU199135 other upstream 1934306 5442857 ~ 5443581 (-) False AMCG00001483
TU199208 other upstream 2086833 5595384 ~ 5597839 (-) True G158207
TU199232 other upstream 2371633 5880184 ~ 5880655 (-) False AMCG00001491

Expression Profile