AMCG00001413 (mrps5,LOC102775872)


Basic Information

Item Value
gene id AMCG00001413
gene name mrps5,LOC102775872
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3188173 ~ 3195828 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001413
gTGAAAAGTGTTTTCAACATGACAGCCAAAGAAGGTAGGAAGAGGTCTATAAGTGCTTTGGTAGCAGTGGGAAATGGAAATGGGGCTGCAGgTTTTGCTTTGGGAAAGGCGGCTGATAGAAACACGGCACTACGAAAaGCCAAGAACAGAGCTATCCACTATCTGTTCTACATAGAGAGATATAACCACCACACcatttatCATGATATTACTTCAACCTTCAAGAGAACCACCATCCGGATGAAGAAGCAAAACCGAGGGTATGGATTACACTGTCACAGAGCAGTCATCACTATATGTAAATTGATTGGCATCGAGGATATGTACGCTAAAGTGTCTGGGTCTACAAACCTGCTGAACATCACAAGGGCTTTATTCCAGGCATTGGCAAAACagGAGACCCATCAAGACCTCTCAGAGAAGAAGCAGCTGAACGTGGTGGAGTTTCAGAATGTATGTGGACCTCTCCCATTCGTGGTAGCTTCCCCACACAAAGGAGCCCGGGAGCAGCCTGAAAAGGAAGATGAGATTCCCGACACCCGACTAGACTGGGGCGATGTGAAGGCTGCACAGGGCATGAAGCGTTCCATCTGGGCAAACGTCAAGAGGACCATCTGGTGA

Function

symbol description
mrps5 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS5 (mitochondrial ribosomal protein S5).

NR:

description
PREDICTED: 28S ribosomal protein S5, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02988 RP-S5, MRPS5, rpsE; small subunit ribosomal protein S5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001413 True 621 mRNA 0.48 6 3188173 3195828

Neighbor

gene id symbol gene type direction distance location
AMCG00001411 NA coding downstream 80146 3107195 ~ 3108027 (-)
AMCG00001427 LOC108269811,LOC108270202 coding downstream 376894 2810284 ~ 2811279 (-)
AMCG00001428 slc8a1 coding downstream 586946 2600826 ~ 2601227 (-)
AMCG00001405 NA coding downstream 684810 2502170 ~ 2503363 (-)
AMCG00001404 NA coding downstream 781070 2397382 ~ 2407103 (-)
AMCG00001412 NA coding upstream 73169 3268997 ~ 3275615 (-)
AMCG00001414 NA coding upstream 80416 3276244 ~ 3277831 (-)
AMCG00001417 NA coding upstream 293266 3489094 ~ 3490120 (-)
AMCG00001419 NA coding upstream 296166 3491994 ~ 3507833 (-)
AMCG00001418 NA coding upstream 312048 3507876 ~ 3508551 (-)
G157578 LOC100846954 non-coding downstream 3019 3184728 ~ 3185154 (-)
G157549 NA non-coding downstream 116799 3071159 ~ 3071374 (-)
G157546 NA non-coding downstream 134724 3053183 ~ 3053449 (-)
G157535 NA non-coding downstream 357992 2829268 ~ 2830181 (-)
G157534 NA non-coding downstream 371207 2784015 ~ 2816966 (-)
G157624 NA non-coding upstream 168793 3364621 ~ 3377794 (-)
G157633 NA non-coding upstream 198417 3394245 ~ 3398019 (-)
G157647 NA non-coding upstream 215809 3411637 ~ 3414248 (-)
G157646 NA non-coding upstream 240517 3436345 ~ 3442353 (-)
G157664 NA non-coding upstream 279796 3475624 ~ 3477594 (-)
AMCG00001396 srsf7 other downstream 1168309 2002361 ~ 2019864 (-)
G157339 NA other downstream 1399331 1750051 ~ 1788842 (-)
AMCG00001385 NA other downstream 2594706 474733 ~ 593467 (-)
G157593 NA other upstream 26849 3222677 ~ 3259955 (-)
G157671 NA other upstream 293939 3489767 ~ 3492710 (-)
AMCG00001416 LOC107564242 other upstream 323047 3518875 ~ 3521708 (-)
AMCG00001426 NA other upstream 678210 3874038 ~ 3896079 (-)
G158123 NA other upstream 2181602 5377430 ~ 5418243 (-)

Expression


Co-expression Network