AMCG00001428 (slc8a1)


Basic Information

Item Value
gene id AMCG00001428
gene name slc8a1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 2600826 ~ 2601227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001428
atgtttggttttgttttctttacagataCTTTTGCCAGTAAAGTGGCCGCCATCCAAGATCAATACGCAGATGCCTCAATTGGGAACGTAACTGGCAGCAATGCAGTCAACGTGTTCCTGGGCATTGGGGTGGCCTGGTCCATCGCCGCCATCTACCACCAAGCTCACGGGCGTGAATTCAGGGTAGACCCAGGCACACTGGCCTTCTCCGTCACCCTGTTCACCATCTTTGCATTCATTTGTGTCGGGGTGCTGCTGTACAGACGGAGACCGGAGATTGGTGGGGAGCTGGGGGGGCCCCGGACTCCTAAGATCCTGACCTGCATGCTGTTCTTCAGTCTGTGGCTCTTGTACATTCTTTTCTCATCCCTGGAGGCTTACTGCCATGTAAAAGGCTTCTAA

Function

symbol description
slc8a1 Enables ankyrin binding activity; calcium:sodium antiporter activity; and calmodulin binding activity. Involved in several processes, including cellular sodium ion homeostasis; metal ion transport; and positive regulation of the force of heart contraction. Located in nucleoplasm and plasma membrane. Is integral component of plasma membrane. Part of cell periphery and synapse. Implicated in hypertension. Biomarker of Alzheimer's disease and pulmonary hypertension.

NR:

description
PREDICTED: sodium/calcium exchanger 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001428 True 402 mRNA 0.53 1 2600826 2601227

Neighbor

gene id symbol gene type direction distance location
AMCG00001405 NA coding downstream 97463 2502170 ~ 2503363 (-)
AMCG00001404 NA coding downstream 193723 2397382 ~ 2407103 (-)
AMCG00001401 map4k3 coding downstream 321029 2271897 ~ 2279797 (-)
AMCG00001402 LOC106608247 coding downstream 349067 2221167 ~ 2251759 (-)
AMCG00001409 sos1,LOC106564790 coding downstream 433482 2110416 ~ 2167344 (-)
AMCG00001427 LOC108269811,LOC108270202 coding upstream 209057 2810284 ~ 2811279 (-)
AMCG00001411 NA coding upstream 505968 3107195 ~ 3108027 (-)
AMCG00001413 mrps5,LOC102775872 coding upstream 586946 3188173 ~ 3195828 (-)
AMCG00001412 NA coding upstream 667770 3268997 ~ 3275615 (-)
AMCG00001414 NA coding upstream 675017 3276244 ~ 3277831 (-)
G157484 NA non-coding downstream 29707 2570870 ~ 2571119 (-)
G157482 NA non-coding downstream 55818 2544748 ~ 2545008 (-)
G157478 NA non-coding downstream 82850 2517622 ~ 2517976 (-)
G157476 NA non-coding downstream 88260 2510116 ~ 2512566 (-)
G157463 NA non-coding downstream 181085 2419528 ~ 2419741 (-)
G157534 NA non-coding upstream 182788 2784015 ~ 2816966 (-)
G157535 NA non-coding upstream 228041 2829268 ~ 2830181 (-)
G157546 NA non-coding upstream 451956 3053183 ~ 3053449 (-)
G157549 NA non-coding upstream 469932 3071159 ~ 3071374 (-)
G157578 LOC100846954 non-coding upstream 583501 3184728 ~ 3185154 (-)
AMCG00001396 srsf7 other downstream 580962 2002361 ~ 2019864 (-)
G157339 NA other downstream 811984 1750051 ~ 1788842 (-)
AMCG00001385 NA other downstream 2007359 474733 ~ 593467 (-)
G157593 NA other upstream 621450 3222677 ~ 3259955 (-)
G157671 NA other upstream 888540 3489767 ~ 3492710 (-)
AMCG00001416 LOC107564242 other upstream 917648 3518875 ~ 3521708 (-)
AMCG00001426 NA other upstream 1272811 3874038 ~ 3896079 (-)
G158123 NA other upstream 2776203 5377430 ~ 5418243 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011398 slc8a1b coding NC_007128.7 CM002901.2 22311413 ~ 22501970 (+)